Carsten Wiuf
Professor
Department of Mathematical Sciences
Universitetsparken 5
2100 København Ø
A Beta-mixture model for dimensionality reduction, sample classification and analysis
Laurila, K., Oster, B., Andersen, C. L., Lamy, P., Orntoft, T., Yli-Harja, O. & Wiuf, Carsten, 27 May 2011, In: BMC Bioinformatics. 12, 215.Research output: Contribution to journal › Journal article › Research › peer-review
A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays
Lamy, P., Andersen, C. L., Dyrskjot, L., Torring, N. & Wiuf, Carsten, 9 Nov 2007, In: BMC Bioinformatics. 8, 434.Research output: Contribution to journal › Journal article › Research › peer-review
A Markov chain approach to randomly grown graphs
Knudsen, M. & Wiuf, Carsten, 9 Jul 2008, In: Journal of Applied Mathematics. 2008, 190836.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A Reaction Network Scheme Which Implements Inference and Learning for Hidden Markov Models
Singh, A., Wiuf, Carsten, Behera, A. & Gopalkrishnan, M., 2019, DNA Computing and Molecular Programming - 25th International Conference, DNA 25, Proceedings. Liu, Y. & Thachuk, C. (eds.). Springer, p. 54-79 26 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 11648 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
A bimodular mechanism of calcium control in eukaryotes
Tidow, H., Poulsen, L. R., Andreeva, A., Knudsen, M., Hein, K. L., Wiuf, Carsten, Palmgren, Michael & Nissen, P., 2012, In: Nature. 491, 7424, p. 468–472 5 p.Research output: Contribution to journal › Letter › Research › peer-review
A coalescence approach to gene conversion
Wiuf, Carsten, 1 Jan 2000, In: Theoretical Population Biology. 57, 4, p. 357-367 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
A coalescent model of recombination hotspots
Wiuf, Carsten & Posada, D., 1 May 2003, In: Genetics. 164, 1, p. 407-417 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
A codon-based model designed to describe lentiviral evolution
Pedersen, A. M. K., Wiuf, Carsten & Christiansen, F. B., 1 Jan 1998, In: MOLECULAR BIOLOGY AND EVOLUTION . 15, 8, p. 1069-1081 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A computational method to preclude multistationarity in networks of interacting species
Feliu, Elisenda & Wiuf, Carsten, 2013, In: Bioinformatics. 29, 18, p. 2327-2334Research output: Contribution to journal › Journal article › Research › peer-review
A likelihood approach to analysis of network data
Wiuf, Carsten, Brameier, M., Hagberg, O. & Stumpf, M. P. H., 16 May 2006, In: Proceedings of the National Academy of Sciences of the United States of America. 103, 20, p. 7566-7570 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
A periodic pattern of SNPs in the human genome
Madsen, B. E., Villesen, P. & Wiuf, Carsten, 1 Oct 2007, In: Genome Research. 17, 10, p. 1414-1419 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A proof of unlimited multistability for phosphorylation cycles
Feliu, Elisenda, Rendall, A. D. & Wiuf, Carsten, 2020, In: Nonlinearity. 33, p. 5629–5658Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A reaction network scheme for hidden Markov model parameter learning
Wiuf, Carsten, Behera, A., Singh, A. & Gopalkrishnan, M., 2023, In: Journal of the Royal Society Interface. 20, 203, 20220877.Research output: Contribution to journal › Journal article › Research › peer-review
A review of software for microarray genotyping
Lamy, P., Grove, J. & Wiuf, Carsten, 1 Jan 2011, In: Human Genomics. 5, 4, p. 304-309 6 p.Research output: Contribution to journal › Review › Research › peer-review
A simulation study of the reliability of recombination detection methods
Wiuf, Carsten, Christensen, T. & Hein, J., 1 Jan 2001, In: MOLECULAR BIOLOGY AND EVOLUTION . 18, 10, p. 1929-1939 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Ab initio identification of human microRNAs based on structure motifs
Brameier, M. & Wiuf, Carsten, 18 Dec 2007, In: BMC Bioinformatics. 8, 478.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Addition of flow reactions preserving multistationarity and bistability
Cappelletti, D., Feliu, Elisenda & Wiuf, Carsten, 2020, In: Mathematical Biosciences. 320, 8 p., 108295.Research output: Contribution to journal › Journal article › Research › peer-review
Algebraic Statistics and Methods in Systems Biology
Wiuf, Carsten, 12 Sep 2011, Handbook of Statistical Systems Biology. Wiley, p. 114-132 19 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
An algebraic approach to signaling cascades with N layers
Feliu, Elisenda, Knudsen, M., Andersen, L. N. & Wiuf, Carsten, 2012, In: Bulletin of Mathematical Biology. 74, 1, p. 45-72 28 p.Research output: Contribution to journal › Journal article › Research › peer-review
An algebro-topological description of protein domain structure
Penner, R. C., Knudsen, M., Wiuf, Carsten & Andersen, J. E., 27 May 2011, In: PLoS ONE. 6, 5, e19670.Research output: Contribution to journal › Journal article › Research › peer-review
Are microRNAs located in genomic regions associated with cancer?
Lamy, P., Andersen, C. L., Dyrskjøt, L., Tørring, N., Ørntoft, T. & Wiuf, Carsten, 20 Nov 2006, In: British Journal of Cancer. 95, 10, p. 1415-1418 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
Association between genetic variation in a region on chromosome 11 and schizophrenia in large samples from Europe
Rietschel, M., Mattheisen, M., Degenhardt, F., Kahn, R. S., Linszen, D. H., Os, J. V., Wiersma, D., Bruggeman, R., Cahn, W., de Haan, L., Krabbendam, L., Myin-Germeys, I., Mühleisen, T. W., Kirsch, P., Esslinger, C., Herms, S., Demontis, D., Steffens, M., Strohmaier, J., Haenisch, B. & 82 others, , 2012, In: Molecular Psychiatry. 17, 9, p. 906-917 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
Binomial subsampling
Wiuf, Carsten & Stumpf, M. P. H., 1 Jan 2006, In: Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences. 462, 2068, p. 1181-1195 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
Bioinformatic identification of FGF, p38-MAPK, and calcium signalling pathways associated with carcinoma in situ in the urinary bladder
Herbsleb, M., Christensen, O. F., Thykjaer, T., Wiuf, Carsten, Borre, M., Ørntoft, T. F. & Dyrskjøt, L., 31 Jan 2008, In: BMC Cancer. 8, 37.Research output: Contribution to journal › Journal article › Research › peer-review
Bounded coordinate-descent for biological sequence classification in high dimensional predictor space
Ifrim, G. & Wiuf, Carsten, 16 Sep 2011, Proceedings of the 17th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, KDD'11. p. 708-716 9 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Cellular compartments cause multistability and allow cells to process more information
Harrington, H. A., Feliu, Elisenda, Wiuf, Carsten & Stumpf, M. P. H., 16 Apr 2013, In: Biophysical Journal. 104, 8, p. 1824-1831 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Challenges in microbial ecology: building predictive understanding of community function and dynamics
Widder, S., Allen, R. J., Pfeiffer, T., Curtis, T. P., Wiuf, C. H., Sloan, W. T., Cordero, O. X., Brown, S. P., Momeni, B., Shou, W., Kettle, H., Flint, H. J., Haas, A. F., Laroche, B., Kreft, J-U., Rainey, P. B., Freilich, S., Schuster, S., Milferstedt, K., van der Meer, J. R. & 10 others, , 2016, In: I S M E Journal. 10, 11, p. 2557-2568 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
Chromosomal imbalance in the progression of high-risk non-muscle invasive bladder cancer
Zieger, K., Wiuf, Carsten, Jensen, K. M. E., Ørntoft, T. & Dyrskjøt, L., 16 May 2009, In: BMC Cancer. 9, 149.Research output: Contribution to journal › Journal article › Research › peer-review
Clonal evolution in t(14;18)-positive follicular lymphoma, evidence for multiple common pathways, and frequent parallel clonal evolution
D'Amore, F., Chan, E., Iqbal, J., Geng, H., Young, K., Xiao, L., Hess, M. M., Sanger, W. G., Smith, L., Wiuf, Carsten, Hagberg, O., Fu, K., Chan, W. C. & Dave, B. J., 15 Nov 2008, In: Clinical Cancer Research. 14, 22, p. 7180-7187 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Co-clustering and visualization of gene expression data and gene ontology terms for Saccharomyces cerevisiae using self-organizing maps
Brameier, M. & Wiuf, Carsten, 1 Apr 2007, In: Journal of Biomedical Informatics. 40, 2, p. 160-173 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Coalescent models derived from birth–death processes
Crespo, F. F., Posada, D. & Wiuf, Carsten, 2021, In: Theoretical Population Biology. 142, p. 1-11Research output: Contribution to journal › Journal article › Research › peer-review
Comprehensive genome methylation analysis in bladder cancer: Identification and validation of novel methylated genes and application of these as urinary tumor markers
Reinert, T., Modin, C., Castano, F. M., Lamy, P., Wojdacz, T. K., Hansen, L. L., Wiuf, Carsten, Borre, M., Dyrskjøt, L. & Ørntoft, T. F., 1 Sep 2011, In: Clinical Cancer Research. 17, 17, p. 5582-5592 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Conditional genealogies and the age of a neutral mutant
Wiuf, Carsten & Donnelly, P., 1 Jan 1999, In: Theoretical Population Biology. 56, 2, p. 183-201 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
Conflicting results in SNP genotype assessment
Hansen, L. L., Madsen, B. E., Pedersen, K. & Wiuf, Carsten, 1 Dec 2007, In: BioTechniques. 43, 6, p. 756-762 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conservation Laws in Biochemical Reaction Networks
Mahdi, A., Ferragut, A., Valls, C. & Wiuf, Carsten, 2017, In: S I A M Journal on Applied Dynamical Systems. 16, 4, p. 2213-2232Research output: Contribution to journal › Journal article › Research › peer-review
Consistency of estimators of population scaled parameters using composite likelihood
Wiuf, Carsten, 1 Nov 2006, In: Journal of Mathematical Biology. 53, 5, p. 821-841 21 p.Research output: Contribution to journal › Journal article › Research › peer-review
Convergence properties of the degree distribution of some growing network models
Hagberg, O. & Wiuf, Carsten, 1 Aug 2006, In: Bulletin of Mathematical Biology. 68, 6, p. 1275-1291 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Core signalling motif displaying multistability through multi-state enzymes
Feng, S., Saez Cornellana, M., Wiuf, Carsten, Feliu, Elisenda & Soyer, O. S., Oct 2016, In: Journal of the Royal Society. Interface. 13, 123, 20160524.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Critical Parameters for Singular Perturbation Reductions of Chemical Reaction Networks
Feliu, Elisenda, Walcher, S. & Wiuf, Carsten, Dec 2022, In: Journal of Nonlinear Science. 32, 6, 41 p., 83.Research output: Contribution to journal › Journal article › Research › peer-review
Development of a hypoxia gene expression classifier with predictive impact for hypoxic modification of radiotherapy in head and neck cancer
Toustrup, K., Sørensen, B. S., Nordsmark, M., Busk, M., Wiuf, Carsten, Alsner, J. & Overgaard, J., 1 Sep 2011, In: Cancer Research. 71, 17, p. 5923-5931 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Do ΔF508 heterozygotes have a selective advantage?
Wiuf, Carsten, 29 Aug 2001, In: Genetical Research. 78, 1, p. 41-47 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Elimination of intermediate species in multiscale stochastic reaction networks
Cappelletti, D. & Wiuf, Carsten, 1 Oct 2016, In: Annals of Applied Probability. 26, 5, p. 2915-2958 44 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Enzyme-sharing as a cause of multi-stationarity in signalling systems
Feliu, Elisenda & Wiuf, Carsten, 2012, In: Journal of the Royal Society. Interface. 9, 71, p. 1224-1232 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating admixture pedigrees of recent hybrids without a contiguous reference genome
Garcia Erill, Genís, Hanghøj, Kristian Ebbesen, Heller, Rasmus, Wiuf, Carsten & Albrechtsen, Anders, 2023, In: Molecular Ecology Resources. 23, 7, p. 1604-1619 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating the size of the human interactome
Stumpf, M. P. H., Thorne, T., De Silva, E., Stewart, R., Hyeong, J. A., Lappe, M. & Wiuf, Carsten, 13 May 2008, In: Proceedings of the National Academy of Sciences of the United States of America. 105, 19, p. 6959-6964 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimation of site frequency spectra from low-coverage sequencing data using stochastic EM reduces overfitting, runtime, and memory usage
Rasmussen, Malthe Sebro, Garcia Erill, Genís, Korneliussen, Thorfinn Sand, Wiuf, Carsten & Albrechtsen, Anders, 2022, In: Genetics. 222, 4, 15 p., iyac148.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimation of the covariance structure from SNP allele frequencies
van Waaij, J., Li, Z. & Wiuf, Carsten, 2022, In: Statistical Applications in Genetics and Molecular Biology. 21, 1, 20 p., 20220005.Research output: Contribution to journal › Journal article › Research › peer-review
Estimation of tumor heterogeneity using CGH array data
Wang, K., Li, J., Li, S., Bolund, L. & Wiuf, Carsten, 9 Jan 2009, In: BMC Bioinformatics. 10, 12.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evaluation of population structure inferred by principal component analysis or the admixture model
Van Waaij, J., Li, Song, Garcia Erill, Genís, Albrechtsen, Anders & Wiuf, Carsten, 2023, In: Genetics. 225, 2, 14 p., iyad157.Research output: Contribution to journal › Journal article › Research › peer-review
Evolution at the system level: the natural history of protein interaction networks
Stumpf, M. P. H., Kelly, W. P., Thorne, T. & Wiuf, Carsten, 1 Jul 2007, In: Trends in Ecology and Evolution. 22, 7, p. 366-373 8 p.Research output: Contribution to journal › Review › Research › peer-review
Evolutionary analysis of protein interaction networks
Wiuf, Carsten & Ratmann, O., 1 Jan 2009, Statistical and Evolutionary Analysis of Biological Networks. Imperial College Press, p. 17-43 27 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Exact analysis of intrinsic qualitative features of phosphorelays using mathematical models
Knudsen, M., Feliu, Elisenda & Wiuf, Carsten, 2012, In: Journal of Theoretical Biology. 300, p. 7-18 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Existence of a unique quasi-stationary distribution in stochastic reaction networks
Christian Hansen, M. & Wiuf, Carsten, 1 Jan 2020, In: Electronic Journal of Probability. 25, 30 p., 45.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fast reactions with non-interacting species in stochastic reaction networks
Hoessly, Linard David & Wiuf, Carsten, 2022, In: Mathematical Biosciences and Engineering. 19, 3, p. 2720-2749Research output: Contribution to journal › Journal article › Research › peer-review
Fatgraph models of proteins
Penner, R. C., Knudsen, M., Wiuf, Carsten & Andersen, J. E., 1 Oct 2010, In: Communications on Pure and Applied Mathematics. 63, 10, p. 1249-1297 49 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Finding the positive feedback loops underlying multi-stationarity
Feliu, Elisenda & Wiuf, Carsten, 2015, In: B M C Systems Biology. 9, 22.Research output: Contribution to journal › Journal article › Research › peer-review
Frequent occurrence of uniparental disomy in colorectal cancer
Andersen, C. L., Wiuf, Carsten, Kruhøffer, M., Korsgaard, M., Laurberg, S. & Ørntoft, T. F., 1 Jan 2007, In: Carcinogenesis. 28, 1, p. 38-48 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
From evidence to inference: Probing the evolution of protein interaction networks
Ratmann, O., Wiuf, Carsten & Pinney, J. W., 1 Oct 2009, In: HFSP Journal. 3, 5, p. 290-306 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Full classification of dynamics for one-dimensional continuous-Time Markov chains with polynomial transition rates
Xu, C., Hansen, M. C. & Wiuf, Carsten, 2023, In: Advances in Applied Probability. 55, 1, p. 321-355Research output: Contribution to journal › Journal article › Research › peer-review
Gene expression classifier predicts for hypoxic modification of radiotherapy with nimorazole in squamous cell carcinomas of the head and neck
Toustrup, K., Sørensen, B. S., Lassen, P., Wiuf, Carsten, Alsner, J. & Overgaard, J., 2012, In: Radiotherapy & Oncology. 102, 1, p. 122-129 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
General theory for stochastic admixture graphs and F-statistics
Soraggi, S. & Wiuf, Carsten, 2019, In: Theoretical Population Biology. 125, p. 56-66 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Genome-wide analysis of allelic imbalance in prostate cancer using the Affymetrix 50K SNP mapping array
Tørring, N., Borre, M., Sørensen, K. D., Andersen, C. L., Wiuf, Carsten & Ørntoft, T. F., 12 Feb 2007, In: British Journal of Cancer. 96, 3, p. 499-506 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Genome-wide scans using archived neonatal dried blood spot samples
Hollegaard, M. V., Grauholm, J., Børglum, A., Nyegaard, M., Nørgaard-Pedersen, B., Ørntoft, T., Mortensen, P. B., Wiuf, Carsten, Mors, O., Didriksen, M., Thorsen, P. & Hougaard, D. M., 4 Jul 2009, In: BMC Genomics. 10, 297.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide study of association and interaction with maternal cytomegalovirus infection suggests new schizophrenia loci
Børglum, A. D., Demontis, D., Grove, J., Pallesen, J., Hollegaard, M. V., Pedersen, C. B., Hedemand, A., Mattheisen, M., Uitterlinden, A., Nyegaard, M., Ørntoft, T., Wiuf, C. H., Didriksen, M., Nordentoft, M., Nöthen, M. M., Rietschel, M., Ophoff, R. A., Cichon, S., Yolken, R. H., Hougaard, D. M. & 3 others, , Mar 2014, In: Molecular Psychiatry. 19, 3, p. 325-333 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Genotyping and annotation of Affymetrix SNP arrays
Lamy, P., Andersen, C. L., Wikman, F. P. & Wiuf, Carsten, 21 Sep 2006, In: Nucleic Acids Research. 34, 14, e100.Research output: Contribution to journal › Journal article › Research › peer-review
Germline mutation in RNASEL predicts increased risk of head and neck, uterine cervix and breast cancer
Madsen, B. E., Ramos, E. M., Boulard, M., Duda, K., Overgaard, J., Nordsmark, M., Wiuf, Carsten & Hansen, L. L., 25 Jun 2008, In: PLOS ONE. 3, 6, e2492.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Graphical criteria for positive solutions to linear systems
Saez, M., Feliu, Elisenda & Wiuf, Carsten, 1 Sep 2018, In: Linear Algebra and Its Applications. 552, p. 166-193Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Graphical reduction of reaction networks by linear elimination of species
Saez Cornellana, M., Wiuf, Carsten & Feliu, Elisenda, 2017, In: Journal of Mathematical Biology. 74, 1, p. 195–237Research output: Contribution to journal › Journal article › Research › peer-review
High-density single nucleotide polymorphism array defines novel stage and location-dependent allelic imbalances in human bladder tumors
Koed, K., Wiuf, Carsten, Christensen, L. L., Wikman, F. P., Zieger, K., Møller, K., Von Der Maase, H. & Ørntoft, T. F., 1 Jan 2005, In: Cancer Research. 65, 1, p. 34-45 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
High-resolution melting analysis for mutation screening of RGSL1, RGS16, and RGS8 in breast cancer
Wiechec, E., Wiuf, Carsten, Overgaard, J. & Hansen, L. L., 1 Feb 2011, In: Cancer Epidemiology Biomarkers and Prevention. 20, 2, p. 397-407 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Identification of endogenous retroviral reading frames in the human genome
Villesen, P., Aagaard, L., Wiuf, Carsten & Pedersen, F. S., 11 Oct 2004, In: Retrovirology. 1, 32.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of hidden population structure in time-scaled phylogenies
Volz, E. M., Wiuf, Carsten, Grad, Y. H., Frost, S. D. W., Dennis, A. M. & Didelot, X., 2020, In: Systematic Biology. 69, 5, p. 884-896Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identifying parameter regions for multistationarity
Conradi, C., Feliu, Elisenda, Mincheva, M. & Wiuf, Carsten, 13 Aug 2017, In: P L o S Computational Biology (Online). 13, 10, 25 p., e1005751.Research output: Contribution to journal › Journal article › Research › peer-review
Importance sampling for the infinite sites model
Hobolth, A., Uyenoyama, M. K. & Wiuf, Carsten, 1 Jan 2008, In: Statistical Applications in Genetics and Molecular Biology. 7, 1, 32.Research output: Contribution to journal › Journal article › Research › peer-review
Incomplete and noisy network data as a percolation process
Stumpf, M. P. H. & Wiuf, Carsten, 6 Oct 2010, In: Journal of the Royal Society Interface. 7, 51, p. 1411-1419 9 p.Research output: Contribution to journal › Review › Research › peer-review
Inference on Recombination and Block Structure Using Unphased Data
Wiuf, Carsten, 1 Jan 2004, In: Genetics. 166, 1, p. 537-545 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Inferring population history from genealogical trees
Wiuf, Carsten, 1 Mar 2003, In: Journal of Mathematical Biology. 46, 3, p. 241-264 24 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Intermediates and Generic Convergence to Equilibria
Marcondes de Freitas, M., Wiuf, Carsten & Feliu, Elisenda, 2017, In: Bulletin of Mathematical Biology. 79, 7, p. 1662–1686Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Intermediates, Catalysts, Persistence, and Boundary Steady States
Marcondes de Freitas, M., Feliu, Elisenda & Wiuf, Carsten, 2017, In: Journal of Mathematical Biology. 74, 4, p. 887–932Research output: Contribution to journal › Journal article › Research › peer-review
- Published
LandScape: a simple method to aggregate p-values and other stochastic variables without a priori grouping
Wiuf, Carsten, Pallesen, J. S., Foldager, L. & Grove, J., Aug 2016, In: Statistical Applications in Genetics and Molecular Biology. 15, 4, p. 349-361Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Large scale identification and categorization of protein sequences using structured logistic regression
Pedersen, B. P., Ifrim, G., Liboriussen, P., Axelsen, K. B., Palmgren, Michael, Nissen, P., Wiuf, Carsten & Pedersen, C. N. S., 20 Jan 2014, In: PLOS ONE. 9, 1, 11 p., e85139.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Linear elimination in chemical reaction networks
Sáez, M., Feliu, Elisenda & Wiuf, Carsten, 2019, Recent Advances in Differential Equations and Applications. Guirao, J. L. G., Hernández, J. A. M. & Esparza, F. P. (eds.). Springer, p. 177-193 17 p. (SEMA SIMAI Springer Series, Vol. 18).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Lyapunov Functions, Stationary Distributions, and Non-equilibrium Potential for Reaction Networks
Anderson, D. F., Craciun, G., Gopalkrishnan , M. & Wiuf, Carsten, 2015, In: Bulletin of Mathematical Biology. 77, 9, p. 1744-1767Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Maximum likelihood estimation and natural pairwise estimating equations are identical for three sequences and a symmetric 2-state substitution model
Hobolth, A. & Wiuf, Carsten, 2024, In: Theoretical Population Biology. 156, p. 1-4Research output: Contribution to journal › Journal article › Research › peer-review
Methods for derivation of LOH and allelic copy numbers using SNP arrays
Wiuf, Carsten, Lamy, P. & Andersen, C. L., 1 Sep 2009, Statistics and Informatics in Molecular Cancer Research. Oxford University Press, Vol. 9780199532872.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Model criticism based on likelihood-free inference, with an application to protein network evolution
Ratmann, O., Andrieu, C., Wiuf, Carsten & Richardson, S., 30 Jun 2009, In: Proceedings of the National Academy of Sciences of the United States of America. 106, 26, p. 10576-10581 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Modelling the contribution of family history and variation in single nucleotide polymorphisms to risk of schizophrenia: a Danish national birth cohort-based study
Agerbo, E., Mortensen, P. B., Wiuf, Carsten, Pedersen, M. S., McGrath, J., Hollegaard, M. V., Nørgaard-Pedersen, B., Hougaard, D. M., Mors, O. & Pedersen, C. B., 2012, In: Schizophrenia Research. 134, 2-3, p. 246-252 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Node balanced steady states: Unifying and generalizing complex and detailed balanced steady states
Feliu, Elisenda, Cappelletti, D. & Wiuf, Carsten, Jul 2018, In: Mathematical Biosciences. 301, p. 68-82Research output: Contribution to journal › Journal article › Research › peer-review
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Nonnegative linear elimination for chemical reaction networks
Sáez, M., Wiuf, Carsten & Feliu, Elisenda, 2019, In: SIAM Journal on Applied Mathematics. 79, 6, p. 2434-2455Research output: Contribution to journal › Journal article › Research › peer-review
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On the Liouville integrability of Edelstein's reaction system in R3
Ferragut, A., Valls, C. & Wiuf, Carsten, 1 Mar 2018, In: Chaos, Solitons and Fractals. 108, p. 129-135 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
On the genealogy of a sample of neutral rare alleles
Wiuf, Carsten, 1 Jan 2000, In: Theoretical Population Biology. 58, 1, p. 61-75 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
On the minimum number of topologies explaining a sample of DNA sequences
Wiuf, Carsten, 1 Dec 2002, In: Theoretical Population Biology. 62, 4, p. 357-363 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
On the number of ancestors to a DNA sequence
Wiuf, Carsten & Hein, J., 1 Nov 1997, In: Genetics. 147, 3, p. 1459-1468 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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On the sum of chemical reactions
Hoessly, Linard David, Wiuf, Carsten & Xia, P., 2023, In: European Journal of Applied Mathematics. 34, 2, p. 303-325 23 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Parchment Glutamine Index (PQI): A novel method to estimate glutamine deamidation levels in parchment collagen obtained from low-quality MALDI-TOF data
Anila Bhuvanendran Nair, Bharath, Palomo, I. R., Markussen, Bo, Wiuf, Carsten, Fiddyment, S. & Collins, Matthew James, 2023, In: Peer Community Journal. 3, 18 p., e10.Research output: Contribution to journal › Journal article › Research › peer-review
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Parchment Glutamine Index (PQI): A novel method to estimate glutamine deamidation levels in parchment collagen obtained from low-quality MALDI-TOF data
Anila Bhuvanendran Nair, Bharath, Palomo, I. R., Markussen, Bo, Wiuf, Carsten, Fiddyment, S. & Collins, Matthew James, 2022, bioRxiv, 18 p.Research output: Working paper › peer-review
- Published
Phosphorelay of non-orthodox two component systems functions through a bi-molecular mechanism in vivo: the case of ArcB
Jovanovic, G., Sheng, X., Ale, A., Feliu, Elisenda, Harrington, H. A., Kirk, P., Wiuf, Carsten, Buck, M. & Stumpf, M. P. H., 23 Mar 2015, In: Molecular BioSystems. 11, p. 1348-1359Research output: Contribution to journal › Journal article › Research › peer-review
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Phosphorelays provide tunable signal processing capabilities for the cell
Kothamachu, V. B., Feliu, Elisenda, Wiuf, Carsten, Cardelli, L. & Soyer, O. S., 2013, In: P L o S Computational Biology (Online). 9, 11, p. e1003322Research output: Contribution to journal › Journal article › Research › peer-review
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Power-Law Kinetics and Determinant Criteria for the Preclusion of Multistationarity in Networks of Interacting Species
Wiuf, Carsten & Feliu, Elisenda, 16 Oct 2013, In: S I A M Journal on Applied Dynamical Systems. 12, 4, p. 1685-1721 37 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Powerful Inference With the D-Statistic on Low-Coverage Whole-Genome Data
Soraggi, S., Wiuf, Carsten & Albrechtsen, Anders, 2018, In: G3: Genes, Genomes, Genetics (Bethesda). 8, 2, p. 551-566Research output: Contribution to journal › Journal article › Research › peer-review
ID: 36080139
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Large scale identification and categorization of protein sequences using structured logistic regression
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Graphical reduction of reaction networks by linear elimination of species
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Identifying parameter regions for multistationarity
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