Carsten Wiuf
Professor
Department of Mathematical Sciences
Universitetsparken 5
2100 København Ø
- 2008
- Published
Estimating the size of the human interactome
Stumpf, M. P. H., Thorne, T., De Silva, E., Stewart, R., Hyeong, J. A., Lappe, M. & Wiuf, Carsten, 13 May 2008, In: Proceedings of the National Academy of Sciences of the United States of America. 105, 19, p. 6959-6964 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
Bioinformatic identification of FGF, p38-MAPK, and calcium signalling pathways associated with carcinoma in situ in the urinary bladder
Herbsleb, M., Christensen, O. F., Thykjaer, T., Wiuf, Carsten, Borre, M., Ørntoft, T. F. & Dyrskjøt, L., 31 Jan 2008, In: BMC Cancer. 8, 37.Research output: Contribution to journal › Journal article › Research › peer-review
Importance sampling for the infinite sites model
Hobolth, A., Uyenoyama, M. K. & Wiuf, Carsten, 1 Jan 2008, In: Statistical Applications in Genetics and Molecular Biology. 7, 1, 32.Research output: Contribution to journal › Journal article › Research › peer-review
- 2007
Ab initio identification of human microRNAs based on structure motifs
Brameier, M. & Wiuf, Carsten, 18 Dec 2007, In: BMC Bioinformatics. 8, 478.Research output: Contribution to journal › Journal article › Research › peer-review
Conflicting results in SNP genotype assessment
Hansen, L. L., Madsen, B. E., Pedersen, K. & Wiuf, Carsten, 1 Dec 2007, In: BioTechniques. 43, 6, p. 756-762 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays
Lamy, P., Andersen, C. L., Dyrskjot, L., Torring, N. & Wiuf, Carsten, 9 Nov 2007, In: BMC Bioinformatics. 8, 434.Research output: Contribution to journal › Journal article › Research › peer-review
Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum
Ratmann, O., Jørgensen, O., Hinkley, T., Stumpf, M., Richardson, S. & Wiuf, Carsten, 1 Nov 2007, In: PLOS Computational Biology. 3, 11, p. 2266-2278 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
A periodic pattern of SNPs in the human genome
Madsen, B. E., Villesen, P. & Wiuf, Carsten, 1 Oct 2007, In: Genome Research. 17, 10, p. 1414-1419 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
Evolution at the system level: the natural history of protein interaction networks
Stumpf, M. P. H., Kelly, W. P., Thorne, T. & Wiuf, Carsten, 1 Jul 2007, In: Trends in Ecology and Evolution. 22, 7, p. 366-373 8 p.Research output: Contribution to journal › Review › Research › peer-review
SNPTools: A software tool for visualization and analysis of microarray data
Sørensen, F. J., Andersen, C. L. & Wiuf, Carsten, 15 Jun 2007, In: Bioinformatics. 23, 12, p. 1550-1552 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
Co-clustering and visualization of gene expression data and gene ontology terms for Saccharomyces cerevisiae using self-organizing maps
Brameier, M. & Wiuf, Carsten, 1 Apr 2007, In: Journal of Biomedical Informatics. 40, 2, p. 160-173 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
Two variance results in population genetics theory
Ewens, W. J., Choudhury, A. R., Lewontin, R. C. & Wiuf, Carsten, 1 Apr 2007, In: Mathematical Population Studies. 14, 2, p. 93-110 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
Genome-wide analysis of allelic imbalance in prostate cancer using the Affymetrix 50K SNP mapping array
Tørring, N., Borre, M., Sørensen, K. D., Andersen, C. L., Wiuf, Carsten & Ørntoft, T. F., 12 Feb 2007, In: British Journal of Cancer. 96, 3, p. 499-506 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Frequent occurrence of uniparental disomy in colorectal cancer
Andersen, C. L., Wiuf, Carsten, Kruhøffer, M., Korsgaard, M., Laurberg, S. & Ørntoft, T. F., 1 Jan 2007, In: Carcinogenesis. 28, 1, p. 38-48 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2006
Are microRNAs located in genomic regions associated with cancer?
Lamy, P., Andersen, C. L., Dyrskjøt, L., Tørring, N., Ørntoft, T. & Wiuf, Carsten, 20 Nov 2006, In: British Journal of Cancer. 95, 10, p. 1415-1418 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
The effects of incomplete protein interaction data on structural and evolutionary inferences
de Silva, E., Thorne, T., Ingram, P., Agrafioti, I., Swire, J., Wiuf, Carsten & Stumpf, M. P. H., 3 Nov 2006, In: BMC Biology. 4, 39.Research output: Contribution to journal › Journal article › Research › peer-review
Consistency of estimators of population scaled parameters using composite likelihood
Wiuf, Carsten, 1 Nov 2006, In: Journal of Mathematical Biology. 53, 5, p. 821-841 21 p.Research output: Contribution to journal › Journal article › Research › peer-review
Genotyping and annotation of Affymetrix SNP arrays
Lamy, P., Andersen, C. L., Wikman, F. P. & Wiuf, Carsten, 21 Sep 2006, In: Nucleic Acids Research. 34, 14, e100.Research output: Contribution to journal › Journal article › Research › peer-review
Convergence properties of the degree distribution of some growing network models
Hagberg, O. & Wiuf, Carsten, 1 Aug 2006, In: Bulletin of Mathematical Biology. 68, 6, p. 1275-1291 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
A likelihood approach to analysis of network data
Wiuf, Carsten, Brameier, M., Hagberg, O. & Stumpf, M. P. H., 16 May 2006, In: Proceedings of the National Academy of Sciences of the United States of America. 103, 20, p. 7566-7570 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
SOX4 expression in bladder carcinoma: Clinical aspects and in vitro functional characterization
Aaboe, M., Birkenkamp-Demtroder, K., Wiuf, Carsten, Sørensen, F. B., Thykjaer, T., Sauter, G., Jensen, K. M. E., Dyrskjøt, L. & Ørntoft, T., 1 Apr 2006, In: Cancer Research. 66, 7, p. 3434-3442 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Binomial subsampling
Wiuf, Carsten & Stumpf, M. P. H., 1 Jan 2006, In: Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences. 462, 2068, p. 1181-1195 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2005
Statistical model selection methods applied to biological networks
Stumpf, M. P. H., Ingram, P. J., Nouvel, I. & Wiuf, Carsten, 1 Dec 2005, Transactions on Computational systems Biology III. p. 65-77 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 3737 LNBI).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
Role of activating fibroblast growth factor receptor 3 mutations in the development of bladder tumors
Zieger, K., Dyrskjøt, L., Wiuf, Carsten, Jensen, J. L., Andersen, C. L., Jensen, K. M. E. & Ørntoft, T. F., 1 Nov 2005, In: Clinical Cancer Research. 11, 21, p. 7709-7719 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Sampling properties of random graphs: The degree distribution
Stumpf, M. P. H. & Wiuf, Carsten, 1 Sep 2005, In: Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 72, 3, 036118.Research output: Contribution to journal › Journal article › Research › peer-review
Subnets of scale-free networks are not scale-free: Sampling properties of networks
Stumpf, M. P. H., Wiuf, Carsten & May, R. M., 22 Mar 2005, In: Proceedings of the National Academy of Sciences of the United States of America. 102, 12, p. 4221-4224 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
High-density single nucleotide polymorphism array defines novel stage and location-dependent allelic imbalances in human bladder tumors
Koed, K., Wiuf, Carsten, Christensen, L. L., Wikman, F. P., Zieger, K., Møller, K., Von Der Maase, H. & Ørntoft, T. F., 1 Jan 2005, In: Cancer Research. 65, 1, p. 34-45 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2004
The probability and chromosomal extent of trans-specific polymorphism
Wiuf, Carsten, Zhao, K., Innan, H. & Nordborg, M., 1 Dec 2004, In: Genetics. 168, 4, p. 2363-2372 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
Identification of endogenous retroviral reading frames in the human genome
Villesen, P., Aagaard, L., Wiuf, Carsten & Pedersen, F. S., 11 Oct 2004, In: Retrovirology. 1, 32.Research output: Contribution to journal › Journal article › Research › peer-review
Inference on Recombination and Block Structure Using Unphased Data
Wiuf, Carsten, 1 Jan 2004, In: Genetics. 166, 1, p. 537-545 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2003
A coalescent model of recombination hotspots
Wiuf, Carsten & Posada, D., 1 May 2003, In: Genetics. 164, 1, p. 407-417 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Inferring population history from genealogical trees
Wiuf, Carsten, 1 Mar 2003, In: Journal of Mathematical Biology. 46, 3, p. 241-264 24 p.Research output: Contribution to journal › Journal article › Research › peer-review
Simulating haplotype blocks in the human genome
Posada, D. & Wiuf, Carsten, 1 Feb 2003, In: Bioinformatics. 19, 2, p. 289-290 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
Some notes on the combinatorial properties of haplotype tagging
Wiuf, Carsten, Laidlaw, Z. & Stumpf, M. P. H., 1 Jan 2003, In: Mathematical Biosciences. 185, 2, p. 205-216 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2002
On the minimum number of topologies explaining a sample of DNA sequences
Wiuf, Carsten, 1 Dec 2002, In: Theoretical Population Biology. 62, 4, p. 357-363 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2001
Recombination in human mitochondrial DNA?
Wiuf, Carsten, 17 Nov 2001, In: Genetics. 159, 2, p. 749-756 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Do ΔF508 heterozygotes have a selective advantage?
Wiuf, Carsten, 29 Aug 2001, In: Genetical Research. 78, 1, p. 41-47 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
A simulation study of the reliability of recombination detection methods
Wiuf, Carsten, Christensen, T. & Hein, J., 1 Jan 2001, In: MOLECULAR BIOLOGY AND EVOLUTION . 18, 10, p. 1929-1939 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Rare alleles and selection
Wiuf, Carsten, 1 Jan 2001, In: Theoretical Population Biology. 59, 4, p. 287-296 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
Recombination analysis using directed graphical models [4]
Strimmer, K., Wiuf, Carsten & Moulton, V., 1 Jan 2001, In: MOLECULAR BIOLOGY AND EVOLUTION . 18, 1, p. 97-99 3 p.Research output: Contribution to journal › Letter › Research › peer-review
- 2000
Statistical alignment: Computational properties, homology testing and goodness-of-fit
Hein, J., Wiuf, Carsten, Knudsen, B., Møller, M. B. & Wibling, G., 8 Sep 2000, In: Journal of Molecular Biology. 302, 1, p. 265-279 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
The coalescent with gene conversion
Wiuf, Carsten & Hein, J., 1 May 2000, In: Genetics. 155, 1, p. 451-462 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
A coalescence approach to gene conversion
Wiuf, Carsten, 1 Jan 2000, In: Theoretical Population Biology. 57, 4, p. 357-367 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
On the genealogy of a sample of neutral rare alleles
Wiuf, Carsten, 1 Jan 2000, In: Theoretical Population Biology. 58, 1, p. 61-75 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 1999
The ancestry of a sample of sequences subject to recombination
Wiuf, Carsten & Hein, J., 1 Mar 1999, In: Genetics. 151, 3, p. 1217-1228 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
Conditional genealogies and the age of a neutral mutant
Wiuf, Carsten & Donnelly, P., 1 Jan 1999, In: Theoretical Population Biology. 56, 2, p. 183-201 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
Recombination as a point process along sequences
Wiuf, Carsten & Hein, J., 1 Jan 1999, In: Theoretical Population Biology. 55, 3, p. 248-259 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 1998
A codon-based model designed to describe lentiviral evolution
Pedersen, A. M. K., Wiuf, Carsten & Christiansen, F. B., 1 Jan 1998, In: MOLECULAR BIOLOGY AND EVOLUTION . 15, 8, p. 1069-1081 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 1997
On the number of ancestors to a DNA sequence
Wiuf, Carsten & Hein, J., 1 Nov 1997, In: Genetics. 147, 3, p. 1459-1468 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 36080139
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Large scale identification and categorization of protein sequences using structured logistic regression
Research output: Contribution to journal › Journal article › Research › peer-review
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Graphical reduction of reaction networks by linear elimination of species
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Identifying parameter regions for multistationarity
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