Carsten Wiuf
Professor
Department of Mathematical Sciences
Universitetsparken 5
2100 København Ø
A Beta-mixture model for dimensionality reduction, sample classification and analysis
Laurila, K., Oster, B., Andersen, C. L., Lamy, P., Orntoft, T., Yli-Harja, O. & Wiuf, Carsten, 27 May 2011, In: BMC Bioinformatics. 12, 215.Research output: Contribution to journal › Journal article › Research › peer-review
A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays
Lamy, P., Andersen, C. L., Dyrskjot, L., Torring, N. & Wiuf, Carsten, 9 Nov 2007, In: BMC Bioinformatics. 8, 434.Research output: Contribution to journal › Journal article › Research › peer-review
A Markov chain approach to randomly grown graphs
Knudsen, M. & Wiuf, Carsten, 9 Jul 2008, In: Journal of Applied Mathematics. 2008, 190836.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A Reaction Network Scheme Which Implements Inference and Learning for Hidden Markov Models
Singh, A., Wiuf, Carsten, Behera, A. & Gopalkrishnan, M., 2019, DNA Computing and Molecular Programming - 25th International Conference, DNA 25, Proceedings. Liu, Y. & Thachuk, C. (eds.). Springer, p. 54-79 26 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 11648 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
A bimodular mechanism of calcium control in eukaryotes
Tidow, H., Poulsen, L. R., Andreeva, A., Knudsen, M., Hein, K. L., Wiuf, Carsten, Palmgren, Michael & Nissen, P., 2012, In: Nature. 491, 7424, p. 468–472 5 p.Research output: Contribution to journal › Letter › Research › peer-review
A coalescence approach to gene conversion
Wiuf, Carsten, 1 Jan 2000, In: Theoretical Population Biology. 57, 4, p. 357-367 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
A coalescent model of recombination hotspots
Wiuf, Carsten & Posada, D., 1 May 2003, In: Genetics. 164, 1, p. 407-417 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
A codon-based model designed to describe lentiviral evolution
Pedersen, A. M. K., Wiuf, Carsten & Christiansen, F. B., 1 Jan 1998, In: MOLECULAR BIOLOGY AND EVOLUTION . 15, 8, p. 1069-1081 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A computational method to preclude multistationarity in networks of interacting species
Feliu, Elisenda & Wiuf, Carsten, 2013, In: Bioinformatics. 29, 18, p. 2327-2334Research output: Contribution to journal › Journal article › Research › peer-review
A likelihood approach to analysis of network data
Wiuf, Carsten, Brameier, M., Hagberg, O. & Stumpf, M. P. H., 16 May 2006, In: Proceedings of the National Academy of Sciences of the United States of America. 103, 20, p. 7566-7570 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
A periodic pattern of SNPs in the human genome
Madsen, B. E., Villesen, P. & Wiuf, Carsten, 1 Oct 2007, In: Genome Research. 17, 10, p. 1414-1419 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A proof of unlimited multistability for phosphorylation cycles
Feliu, Elisenda, Rendall, A. D. & Wiuf, Carsten, 2020, In: Nonlinearity. 33, p. 5629–5658Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A reaction network scheme for hidden Markov model parameter learning
Wiuf, Carsten, Behera, A., Singh, A. & Gopalkrishnan, M., 2023, In: Journal of the Royal Society Interface. 20, 203, 20220877.Research output: Contribution to journal › Journal article › Research › peer-review
A review of software for microarray genotyping
Lamy, P., Grove, J. & Wiuf, Carsten, 1 Jan 2011, In: Human Genomics. 5, 4, p. 304-309 6 p.Research output: Contribution to journal › Review › Research › peer-review
A simulation study of the reliability of recombination detection methods
Wiuf, Carsten, Christensen, T. & Hein, J., 1 Jan 2001, In: MOLECULAR BIOLOGY AND EVOLUTION . 18, 10, p. 1929-1939 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Ab initio identification of human microRNAs based on structure motifs
Brameier, M. & Wiuf, Carsten, 18 Dec 2007, In: BMC Bioinformatics. 8, 478.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Addition of flow reactions preserving multistationarity and bistability
Cappelletti, D., Feliu, Elisenda & Wiuf, Carsten, 2020, In: Mathematical Biosciences. 320, 8 p., 108295.Research output: Contribution to journal › Journal article › Research › peer-review
Algebraic Statistics and Methods in Systems Biology
Wiuf, Carsten, 12 Sep 2011, Handbook of Statistical Systems Biology. Wiley, p. 114-132 19 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
An algebraic approach to signaling cascades with N layers
Feliu, Elisenda, Knudsen, M., Andersen, L. N. & Wiuf, Carsten, 2012, In: Bulletin of Mathematical Biology. 74, 1, p. 45-72 28 p.Research output: Contribution to journal › Journal article › Research › peer-review
An algebro-topological description of protein domain structure
Penner, R. C., Knudsen, M., Wiuf, Carsten & Andersen, J. E., 27 May 2011, In: PLoS ONE. 6, 5, e19670.Research output: Contribution to journal › Journal article › Research › peer-review
Are microRNAs located in genomic regions associated with cancer?
Lamy, P., Andersen, C. L., Dyrskjøt, L., Tørring, N., Ørntoft, T. & Wiuf, Carsten, 20 Nov 2006, In: British Journal of Cancer. 95, 10, p. 1415-1418 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
Association between genetic variation in a region on chromosome 11 and schizophrenia in large samples from Europe
Rietschel, M., Mattheisen, M., Degenhardt, F., Kahn, R. S., Linszen, D. H., Os, J. V., Wiersma, D., Bruggeman, R., Cahn, W., de Haan, L., Krabbendam, L., Myin-Germeys, I., Mühleisen, T. W., Kirsch, P., Esslinger, C., Herms, S., Demontis, D., Steffens, M., Strohmaier, J., Haenisch, B. & 82 others, , 2012, In: Molecular Psychiatry. 17, 9, p. 906-917 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
Binomial subsampling
Wiuf, Carsten & Stumpf, M. P. H., 1 Jan 2006, In: Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences. 462, 2068, p. 1181-1195 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
Bioinformatic identification of FGF, p38-MAPK, and calcium signalling pathways associated with carcinoma in situ in the urinary bladder
Herbsleb, M., Christensen, O. F., Thykjaer, T., Wiuf, Carsten, Borre, M., Ørntoft, T. F. & Dyrskjøt, L., 31 Jan 2008, In: BMC Cancer. 8, 37.Research output: Contribution to journal › Journal article › Research › peer-review
Bounded coordinate-descent for biological sequence classification in high dimensional predictor space
Ifrim, G. & Wiuf, Carsten, 16 Sep 2011, Proceedings of the 17th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, KDD'11. p. 708-716 9 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Cellular compartments cause multistability and allow cells to process more information
Harrington, H. A., Feliu, Elisenda, Wiuf, Carsten & Stumpf, M. P. H., 16 Apr 2013, In: Biophysical Journal. 104, 8, p. 1824-1831 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Challenges in microbial ecology: building predictive understanding of community function and dynamics
Widder, S., Allen, R. J., Pfeiffer, T., Curtis, T. P., Wiuf, C. H., Sloan, W. T., Cordero, O. X., Brown, S. P., Momeni, B., Shou, W., Kettle, H., Flint, H. J., Haas, A. F., Laroche, B., Kreft, J-U., Rainey, P. B., Freilich, S., Schuster, S., Milferstedt, K., van der Meer, J. R. & 10 others, , 2016, In: I S M E Journal. 10, 11, p. 2557-2568 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
Chromosomal imbalance in the progression of high-risk non-muscle invasive bladder cancer
Zieger, K., Wiuf, Carsten, Jensen, K. M. E., Ørntoft, T. & Dyrskjøt, L., 16 May 2009, In: BMC Cancer. 9, 149.Research output: Contribution to journal › Journal article › Research › peer-review
Clonal evolution in t(14;18)-positive follicular lymphoma, evidence for multiple common pathways, and frequent parallel clonal evolution
D'Amore, F., Chan, E., Iqbal, J., Geng, H., Young, K., Xiao, L., Hess, M. M., Sanger, W. G., Smith, L., Wiuf, Carsten, Hagberg, O., Fu, K., Chan, W. C. & Dave, B. J., 15 Nov 2008, In: Clinical Cancer Research. 14, 22, p. 7180-7187 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Co-clustering and visualization of gene expression data and gene ontology terms for Saccharomyces cerevisiae using self-organizing maps
Brameier, M. & Wiuf, Carsten, 1 Apr 2007, In: Journal of Biomedical Informatics. 40, 2, p. 160-173 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Coalescent models derived from birth–death processes
Crespo, F. F., Posada, D. & Wiuf, Carsten, 2021, In: Theoretical Population Biology. 142, p. 1-11Research output: Contribution to journal › Journal article › Research › peer-review
Comprehensive genome methylation analysis in bladder cancer: Identification and validation of novel methylated genes and application of these as urinary tumor markers
Reinert, T., Modin, C., Castano, F. M., Lamy, P., Wojdacz, T. K., Hansen, L. L., Wiuf, Carsten, Borre, M., Dyrskjøt, L. & Ørntoft, T. F., 1 Sep 2011, In: Clinical Cancer Research. 17, 17, p. 5582-5592 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Conditional genealogies and the age of a neutral mutant
Wiuf, Carsten & Donnelly, P., 1 Jan 1999, In: Theoretical Population Biology. 56, 2, p. 183-201 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
Conflicting results in SNP genotype assessment
Hansen, L. L., Madsen, B. E., Pedersen, K. & Wiuf, Carsten, 1 Dec 2007, In: BioTechniques. 43, 6, p. 756-762 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conservation Laws in Biochemical Reaction Networks
Mahdi, A., Ferragut, A., Valls, C. & Wiuf, Carsten, 2017, In: S I A M Journal on Applied Dynamical Systems. 16, 4, p. 2213-2232Research output: Contribution to journal › Journal article › Research › peer-review
Consistency of estimators of population scaled parameters using composite likelihood
Wiuf, Carsten, 1 Nov 2006, In: Journal of Mathematical Biology. 53, 5, p. 821-841 21 p.Research output: Contribution to journal › Journal article › Research › peer-review
Convergence properties of the degree distribution of some growing network models
Hagberg, O. & Wiuf, Carsten, 1 Aug 2006, In: Bulletin of Mathematical Biology. 68, 6, p. 1275-1291 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Core signalling motif displaying multistability through multi-state enzymes
Feng, S., Saez Cornellana, M., Wiuf, Carsten, Feliu, Elisenda & Soyer, O. S., Oct 2016, In: Journal of the Royal Society. Interface. 13, 123, 20160524.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Critical Parameters for Singular Perturbation Reductions of Chemical Reaction Networks
Feliu, Elisenda, Walcher, S. & Wiuf, Carsten, Dec 2022, In: Journal of Nonlinear Science. 32, 6, 41 p., 83.Research output: Contribution to journal › Journal article › Research › peer-review
Development of a hypoxia gene expression classifier with predictive impact for hypoxic modification of radiotherapy in head and neck cancer
Toustrup, K., Sørensen, B. S., Nordsmark, M., Busk, M., Wiuf, Carsten, Alsner, J. & Overgaard, J., 1 Sep 2011, In: Cancer Research. 71, 17, p. 5923-5931 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Do ΔF508 heterozygotes have a selective advantage?
Wiuf, Carsten, 29 Aug 2001, In: Genetical Research. 78, 1, p. 41-47 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Elimination of intermediate species in multiscale stochastic reaction networks
Cappelletti, D. & Wiuf, Carsten, 1 Oct 2016, In: Annals of Applied Probability. 26, 5, p. 2915-2958 44 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Enzyme-sharing as a cause of multi-stationarity in signalling systems
Feliu, Elisenda & Wiuf, Carsten, 2012, In: Journal of the Royal Society. Interface. 9, 71, p. 1224-1232 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating admixture pedigrees of recent hybrids without a contiguous reference genome
Garcia Erill, Genís, Hanghøj, Kristian Ebbesen, Heller, Rasmus, Wiuf, Carsten & Albrechtsen, Anders, 2023, In: Molecular Ecology Resources. 23, 7, p. 1604-1619 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating the size of the human interactome
Stumpf, M. P. H., Thorne, T., De Silva, E., Stewart, R., Hyeong, J. A., Lappe, M. & Wiuf, Carsten, 13 May 2008, In: Proceedings of the National Academy of Sciences of the United States of America. 105, 19, p. 6959-6964 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimation of site frequency spectra from low-coverage sequencing data using stochastic EM reduces overfitting, runtime, and memory usage
Rasmussen, Malthe Sebro, Garcia Erill, Genís, Korneliussen, Thorfinn Sand, Wiuf, Carsten & Albrechtsen, Anders, 2022, In: Genetics. 222, 4, 15 p., iyac148.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimation of the covariance structure from SNP allele frequencies
van Waaij, J., Li, Z. & Wiuf, Carsten, 2022, In: Statistical Applications in Genetics and Molecular Biology. 21, 1, 20 p., 20220005.Research output: Contribution to journal › Journal article › Research › peer-review
Estimation of tumor heterogeneity using CGH array data
Wang, K., Li, J., Li, S., Bolund, L. & Wiuf, Carsten, 9 Jan 2009, In: BMC Bioinformatics. 10, 12.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evaluation of population structure inferred by principal component analysis or the admixture model
Van Waaij, J., Li, Song, Garcia Erill, Genís, Albrechtsen, Anders & Wiuf, Carsten, 2023, In: Genetics. 225, 2, 14 p., iyad157.Research output: Contribution to journal › Journal article › Research › peer-review
Evolution at the system level: the natural history of protein interaction networks
Stumpf, M. P. H., Kelly, W. P., Thorne, T. & Wiuf, Carsten, 1 Jul 2007, In: Trends in Ecology and Evolution. 22, 7, p. 366-373 8 p.Research output: Contribution to journal › Review › Research › peer-review
ID: 36080139
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Large scale identification and categorization of protein sequences using structured logistic regression
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Graphical reduction of reaction networks by linear elimination of species
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Identifying parameter regions for multistationarity
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