Carsten Wiuf
Professor
Department of Mathematical Sciences
Universitetsparken 5
2100 København Ø
- Published
Estimation of the covariance structure from SNP allele frequencies
van Waaij, J., Li, Z. & Wiuf, Carsten, 2022, In: Statistical Applications in Genetics and Molecular Biology. 21, 1, 20 p., 20220005.Research output: Contribution to journal › Journal article › Research › peer-review
The effects of incomplete protein interaction data on structural and evolutionary inferences
de Silva, E., Thorne, T., Ingram, P., Agrafioti, I., Swire, J., Wiuf, Carsten & Stumpf, M. P. H., 3 Nov 2006, In: BMC Biology. 4, 39.Research output: Contribution to journal › Journal article › Research › peer-review
Chromosomal imbalance in the progression of high-risk non-muscle invasive bladder cancer
Zieger, K., Wiuf, Carsten, Jensen, K. M. E., Ørntoft, T. & Dyrskjøt, L., 16 May 2009, In: BMC Cancer. 9, 149.Research output: Contribution to journal › Journal article › Research › peer-review
Role of activating fibroblast growth factor receptor 3 mutations in the development of bladder tumors
Zieger, K., Dyrskjøt, L., Wiuf, Carsten, Jensen, J. L., Andersen, C. L., Jensen, K. M. E. & Ørntoft, T. F., 1 Nov 2005, In: Clinical Cancer Research. 11, 21, p. 7709-7719 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Full classification of dynamics for one-dimensional continuous-Time Markov chains with polynomial transition rates
Xu, C., Hansen, M. C. & Wiuf, Carsten, 2023, In: Advances in Applied Probability. 55, 1, p. 321-355Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Structural classification of continuous time Markov chains with applications
Xu, C., Hansen, M. C. & Wiuf, Carsten, 2022, In: Stochastics. 94, 7, p. 1003-1030Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
The asymptotic tails of limit distributions of continuous-time Markov chains
Xu, C., Hansen, M. C. & Wiuf, Carsten, 2023, (E-pub ahead of print) In: Advances in Applied Probability.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Power-Law Kinetics and Determinant Criteria for the Preclusion of Multistationarity in Networks of Interacting Species
Wiuf, Carsten & Feliu, Elisenda, 16 Oct 2013, In: S I A M Journal on Applied Dynamical Systems. 12, 4, p. 1685-1721 37 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
LandScape: a simple method to aggregate p-values and other stochastic variables without a priori grouping
Wiuf, Carsten, Pallesen, J. S., Foldager, L. & Grove, J., Aug 2016, In: Statistical Applications in Genetics and Molecular Biology. 15, 4, p. 349-361Research output: Contribution to journal › Journal article › Research › peer-review
Consistency of estimators of population scaled parameters using composite likelihood
Wiuf, Carsten, 1 Nov 2006, In: Journal of Mathematical Biology. 53, 5, p. 821-841 21 p.Research output: Contribution to journal › Journal article › Research › peer-review
Inference on Recombination and Block Structure Using Unphased Data
Wiuf, Carsten, 1 Jan 2004, In: Genetics. 166, 1, p. 537-545 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Conditional genealogies and the age of a neutral mutant
Wiuf, Carsten & Donnelly, P., 1 Jan 1999, In: Theoretical Population Biology. 56, 2, p. 183-201 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
Some notes on the combinatorial properties of haplotype tagging
Wiuf, Carsten, Laidlaw, Z. & Stumpf, M. P. H., 1 Jan 2003, In: Mathematical Biosciences. 185, 2, p. 205-216 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
Evolutionary analysis of protein interaction networks
Wiuf, Carsten & Ratmann, O., 1 Jan 2009, Statistical and Evolutionary Analysis of Biological Networks. Imperial College Press, p. 17-43 27 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Recombination as a point process along sequences
Wiuf, Carsten & Hein, J., 1 Jan 1999, In: Theoretical Population Biology. 55, 3, p. 248-259 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
Statistics and Informatics in Molecular Cancer Research
Wiuf, Carsten & Andersen, C. L., 1 Sep 2009, Oxford University Press. 208 p.Research output: Book/Report › Book › Research › peer-review
- Published
A reaction network scheme for hidden Markov model parameter learning
Wiuf, Carsten, Behera, A., Singh, A. & Gopalkrishnan, M., 2023, In: Journal of the Royal Society Interface. 20, 203, 20220877.Research output: Contribution to journal › Journal article › Research › peer-review
The probability and chromosomal extent of trans-specific polymorphism
Wiuf, Carsten, Zhao, K., Innan, H. & Nordborg, M., 1 Dec 2004, In: Genetics. 168, 4, p. 2363-2372 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
A coalescence approach to gene conversion
Wiuf, Carsten, 1 Jan 2000, In: Theoretical Population Biology. 57, 4, p. 357-367 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
The ancestry of a sample of sequences subject to recombination
Wiuf, Carsten & Hein, J., 1 Mar 1999, In: Genetics. 151, 3, p. 1217-1228 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
The coalescent with gene conversion
Wiuf, Carsten & Hein, J., 1 May 2000, In: Genetics. 155, 1, p. 451-462 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
A coalescent model of recombination hotspots
Wiuf, Carsten & Posada, D., 1 May 2003, In: Genetics. 164, 1, p. 407-417 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Some properties of the conditioned reconstructed process with Bernoulli sampling
Wiuf, Carsten, Jul 2018, In: Theoretical Population Biology. 122, p. 36-45 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
Methods for derivation of LOH and allelic copy numbers using SNP arrays
Wiuf, Carsten, Lamy, P. & Andersen, C. L., 1 Sep 2009, Statistics and Informatics in Molecular Cancer Research. Oxford University Press, Vol. 9780199532872.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
On the number of ancestors to a DNA sequence
Wiuf, Carsten & Hein, J., 1 Nov 1997, In: Genetics. 147, 3, p. 1459-1468 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
Binomial subsampling
Wiuf, Carsten & Stumpf, M. P. H., 1 Jan 2006, In: Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences. 462, 2068, p. 1181-1195 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
Inferring population history from genealogical trees
Wiuf, Carsten, 1 Mar 2003, In: Journal of Mathematical Biology. 46, 3, p. 241-264 24 p.Research output: Contribution to journal › Journal article › Research › peer-review
A simulation study of the reliability of recombination detection methods
Wiuf, Carsten, Christensen, T. & Hein, J., 1 Jan 2001, In: MOLECULAR BIOLOGY AND EVOLUTION . 18, 10, p. 1929-1939 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Recombination in human mitochondrial DNA?
Wiuf, Carsten, 17 Nov 2001, In: Genetics. 159, 2, p. 749-756 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
On the minimum number of topologies explaining a sample of DNA sequences
Wiuf, Carsten, 1 Dec 2002, In: Theoretical Population Biology. 62, 4, p. 357-363 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
Rare alleles and selection
Wiuf, Carsten, 1 Jan 2001, In: Theoretical Population Biology. 59, 4, p. 287-296 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
A likelihood approach to analysis of network data
Wiuf, Carsten, Brameier, M., Hagberg, O. & Stumpf, M. P. H., 16 May 2006, In: Proceedings of the National Academy of Sciences of the United States of America. 103, 20, p. 7566-7570 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
Algebraic Statistics and Methods in Systems Biology
Wiuf, Carsten, 12 Sep 2011, Handbook of Statistical Systems Biology. Wiley, p. 114-132 19 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
On the genealogy of a sample of neutral rare alleles
Wiuf, Carsten, 1 Jan 2000, In: Theoretical Population Biology. 58, 1, p. 61-75 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
Do ΔF508 heterozygotes have a selective advantage?
Wiuf, Carsten, 29 Aug 2001, In: Genetical Research. 78, 1, p. 41-47 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
High-resolution melting analysis for mutation screening of RGSL1, RGS16, and RGS8 in breast cancer
Wiechec, E., Wiuf, Carsten, Overgaard, J. & Hansen, L. L., 1 Feb 2011, In: Cancer Epidemiology Biomarkers and Prevention. 20, 2, p. 397-407 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Challenges in microbial ecology: building predictive understanding of community function and dynamics
Widder, S., Allen, R. J., Pfeiffer, T., Curtis, T. P., Wiuf, C. H., Sloan, W. T., Cordero, O. X., Brown, S. P., Momeni, B., Shou, W., Kettle, H., Flint, H. J., Haas, A. F., Laroche, B., Kreft, J-U., Rainey, P. B., Freilich, S., Schuster, S., Milferstedt, K., van der Meer, J. R. & 10 others, , 2016, In: I S M E Journal. 10, 11, p. 2557-2568 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
Estimation of tumor heterogeneity using CGH array data
Wang, K., Li, J., Li, S., Bolund, L. & Wiuf, Carsten, 9 Jan 2009, In: BMC Bioinformatics. 10, 12.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of hidden population structure in time-scaled phylogenies
Volz, E. M., Wiuf, Carsten, Grad, Y. H., Frost, S. D. W., Dennis, A. M. & Didelot, X., 2020, In: Systematic Biology. 69, 5, p. 884-896Research output: Contribution to journal › Journal article › Research › peer-review
- Published
epiG: statistical inference and profiling of DNA methylation from whole-genome bisulfite sequencing data
Vincent, M., Mundbjerg, K., Pedersen, J. S., Liang, G., Jones, P. A., Orntoft, T. F., Sorensen, K. D. & Wiuf, Carsten, 21 Feb 2017, In: Genome Biology (Online Edition). 18, 38.Research output: Contribution to journal › Journal article › Research › peer-review
Identification of endogenous retroviral reading frames in the human genome
Villesen, P., Aagaard, L., Wiuf, Carsten & Pedersen, F. S., 11 Oct 2004, In: Retrovirology. 1, 32.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evaluation of population structure inferred by principal component analysis or the admixture model
Van Waaij, J., Li, Song, Garcia Erill, Genís, Albrechtsen, Anders & Wiuf, Carsten, 2023, In: Genetics. 225, 2, 14 p., iyad157.Research output: Contribution to journal › Journal article › Research › peer-review
Genome-wide analysis of allelic imbalance in prostate cancer using the Affymetrix 50K SNP mapping array
Tørring, N., Borre, M., Sørensen, K. D., Andersen, C. L., Wiuf, Carsten & Ørntoft, T. F., 12 Feb 2007, In: British Journal of Cancer. 96, 3, p. 499-506 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Development of a hypoxia gene expression classifier with predictive impact for hypoxic modification of radiotherapy in head and neck cancer
Toustrup, K., Sørensen, B. S., Nordsmark, M., Busk, M., Wiuf, Carsten, Alsner, J. & Overgaard, J., 1 Sep 2011, In: Cancer Research. 71, 17, p. 5923-5931 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Gene expression classifier predicts for hypoxic modification of radiotherapy with nimorazole in squamous cell carcinomas of the head and neck
Toustrup, K., Sørensen, B. S., Lassen, P., Wiuf, Carsten, Alsner, J. & Overgaard, J., 2012, In: Radiotherapy & Oncology. 102, 1, p. 122-129 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A bimodular mechanism of calcium control in eukaryotes
Tidow, H., Poulsen, L. R., Andreeva, A., Knudsen, M., Hein, K. L., Wiuf, Carsten, Palmgren, Michael & Nissen, P., 2012, In: Nature. 491, 7424, p. 468–472 5 p.Research output: Contribution to journal › Letter › Research › peer-review
Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis
Thorsen, K., Schepeler, T., Øster, B., Rasmussen, M. H., Vang, S., Wang, K., Hansen, K. Q., Lamy, P., Pedersen, J. S., Eller, A., Mansilla, F., Laurila, K., Wiuf, Carsten, Laurberg, S., Dyrskjøt, L., Ørntoft, T. F. & Andersen, C. L., 14 Oct 2011, In: BMC Genomics. 12, 505.Research output: Contribution to journal › Journal article › Research › peer-review
SNPTools: A software tool for visualization and analysis of microarray data
Sørensen, F. J., Andersen, C. L. & Wiuf, Carsten, 15 Jun 2007, In: Bioinformatics. 23, 12, p. 1550-1552 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Nonnegative linear elimination for chemical reaction networks
Sáez, M., Wiuf, Carsten & Feliu, Elisenda, 2019, In: SIAM Journal on Applied Mathematics. 79, 6, p. 2434-2455Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Linear elimination in chemical reaction networks
Sáez, M., Feliu, Elisenda & Wiuf, Carsten, 2019, Recent Advances in Differential Equations and Applications. Guirao, J. L. G., Hernández, J. A. M. & Esparza, F. P. (eds.). Springer, p. 177-193 17 p. (SEMA SIMAI Springer Series, Vol. 18).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
ID: 36080139
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Large scale identification and categorization of protein sequences using structured logistic regression
Research output: Contribution to journal › Journal article › Research › peer-review
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292
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Graphical reduction of reaction networks by linear elimination of species
Research output: Contribution to journal › Journal article › Research › peer-review
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Identifying parameter regions for multistationarity
Research output: Contribution to journal › Journal article › Research › peer-review
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