Carsten Wiuf

Carsten Wiuf

Professor

ORCID: 0000-0002-1302-4445

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  1. Published

    Linear elimination in chemical reaction networks

    Sáez, M., Feliu, Elisenda & Wiuf, Carsten, 2019, Recent Advances in Differential Equations and Applications. Guirao, J. L. G., Hernández, J. A. M. & Esparza, F. P. (eds.). Springer, p. 177-193 17 p. (SEMA SIMAI Springer Series, Vol. 18).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  2. SNPTools: A software tool for visualization and analysis of microarray data

    Sørensen, F. J., Andersen, C. L. & Wiuf, Carsten, 15 Jun 2007, In: Bioinformatics. 23, 12, p. 1550-1552 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis

    Thorsen, K., Schepeler, T., Øster, B., Rasmussen, M. H., Vang, S., Wang, K., Hansen, K. Q., Lamy, P., Pedersen, J. S., Eller, A., Mansilla, F., Laurila, K., Wiuf, Carsten, Laurberg, S., Dyrskjøt, L., Ørntoft, T. F. & Andersen, C. L., 14 Oct 2011, In: BMC Genomics. 12, 505.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    A bimodular mechanism of calcium control in eukaryotes

    Tidow, H., Poulsen, L. R., Andreeva, A., Knudsen, M., Hein, K. L., Wiuf, Carsten, Palmgren, Michael & Nissen, P., 2012, In: Nature. 491, 7424, p. 468–472 5 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  5. Development of a hypoxia gene expression classifier with predictive impact for hypoxic modification of radiotherapy in head and neck cancer

    Toustrup, K., Sørensen, B. S., Nordsmark, M., Busk, M., Wiuf, Carsten, Alsner, J. & Overgaard, J., 1 Sep 2011, In: Cancer Research. 71, 17, p. 5923-5931 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Gene expression classifier predicts for hypoxic modification of radiotherapy with nimorazole in squamous cell carcinomas of the head and neck

    Toustrup, K., Sørensen, B. S., Lassen, P., Wiuf, Carsten, Alsner, J. & Overgaard, J., 2012, In: Radiotherapy & Oncology. 102, 1, p. 122-129 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Genome-wide analysis of allelic imbalance in prostate cancer using the Affymetrix 50K SNP mapping array

    Tørring, N., Borre, M., Sørensen, K. D., Andersen, C. L., Wiuf, Carsten & Ørntoft, T. F., 12 Feb 2007, In: British Journal of Cancer. 96, 3, p. 499-506 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Evaluation of population structure inferred by principal component analysis or the admixture model

    Van Waaij, J., Li, Song, Garcia Erill, Genís, Albrechtsen, Anders & Wiuf, Carsten, 2023, In: Genetics. 225, 2, 14 p., iyad157.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Identification of endogenous retroviral reading frames in the human genome

    Villesen, P., Aagaard, L., Wiuf, Carsten & Pedersen, F. S., 11 Oct 2004, In: Retrovirology. 1, 32.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    epiG: statistical inference and profiling of DNA methylation from whole-genome bisulfite sequencing data

    Vincent, M., Mundbjerg, K., Pedersen, J. S., Liang, G., Jones, P. A., Orntoft, T. F., Sorensen, K. D. & Wiuf, Carsten, 21 Feb 2017, In: Genome Biology (Online Edition). 18, 38.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Identification of hidden population structure in time-scaled phylogenies

    Volz, E. M., Wiuf, Carsten, Grad, Y. H., Frost, S. D. W., Dennis, A. M. & Didelot, X., 2020, In: Systematic Biology. 69, 5, p. 884-896

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Estimation of tumor heterogeneity using CGH array data

    Wang, K., Li, J., Li, S., Bolund, L. & Wiuf, Carsten, 9 Jan 2009, In: BMC Bioinformatics. 10, 12.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Challenges in microbial ecology: building predictive understanding of community function and dynamics

    Widder, S., Allen, R. J., Pfeiffer, T., Curtis, T. P., Wiuf, C. H., Sloan, W. T., Cordero, O. X., Brown, S. P., Momeni, B., Shou, W., Kettle, H., Flint, H. J., Haas, A. F., Laroche, B., Kreft, J-U., Rainey, P. B., Freilich, S., Schuster, S., Milferstedt, K., van der Meer, J. R. & 10 others, Groβkopf, T., Huisman, J., Free, A., Picioreanu, C., Quince, C., Klapper, I., Labarthe, S., Smets, B. F., Wang, H. & Soyer, O. S., 2016, In: I S M E Journal. 10, 11, p. 2557-2568 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. High-resolution melting analysis for mutation screening of RGSL1, RGS16, and RGS8 in breast cancer

    Wiechec, E., Wiuf, Carsten, Overgaard, J. & Hansen, L. L., 1 Feb 2011, In: Cancer Epidemiology Biomarkers and Prevention. 20, 2, p. 397-407 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Do ΔF508 heterozygotes have a selective advantage?

    Wiuf, Carsten, 29 Aug 2001, In: Genetical Research. 78, 1, p. 41-47 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Consistency of estimators of population scaled parameters using composite likelihood

    Wiuf, Carsten, 1 Nov 2006, In: Journal of Mathematical Biology. 53, 5, p. 821-841 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Inference on Recombination and Block Structure Using Unphased Data

    Wiuf, Carsten, 1 Jan 2004, In: Genetics. 166, 1, p. 537-545 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Conditional genealogies and the age of a neutral mutant

    Wiuf, Carsten & Donnelly, P., 1 Jan 1999, In: Theoretical Population Biology. 56, 2, p. 183-201 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Some notes on the combinatorial properties of haplotype tagging

    Wiuf, Carsten, Laidlaw, Z. & Stumpf, M. P. H., 1 Jan 2003, In: Mathematical Biosciences. 185, 2, p. 205-216 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Evolutionary analysis of protein interaction networks

    Wiuf, Carsten & Ratmann, O., 1 Jan 2009, Statistical and Evolutionary Analysis of Biological Networks. Imperial College Press, p. 17-43 27 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  21. Recombination as a point process along sequences

    Wiuf, Carsten & Hein, J., 1 Jan 1999, In: Theoretical Population Biology. 55, 3, p. 248-259 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Statistics and Informatics in Molecular Cancer Research

    Wiuf, Carsten & Andersen, C. L., 1 Sep 2009, Oxford University Press. 208 p.

    Research output: Book/Report › Book › Research › peer-review

  23. Published

    A reaction network scheme for hidden Markov model parameter learning

    Wiuf, Carsten, Behera, A., Singh, A. & Gopalkrishnan, M., 2023, In: Journal of the Royal Society Interface. 20, 203, 20220877.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. The probability and chromosomal extent of trans-specific polymorphism

    Wiuf, Carsten, Zhao, K., Innan, H. & Nordborg, M., 1 Dec 2004, In: Genetics. 168, 4, p. 2363-2372 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. A coalescence approach to gene conversion

    Wiuf, Carsten, 1 Jan 2000, In: Theoretical Population Biology. 57, 4, p. 357-367 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. The ancestry of a sample of sequences subject to recombination

    Wiuf, Carsten & Hein, J., 1 Mar 1999, In: Genetics. 151, 3, p. 1217-1228 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. The coalescent with gene conversion

    Wiuf, Carsten & Hein, J., 1 May 2000, In: Genetics. 155, 1, p. 451-462 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. A coalescent model of recombination hotspots

    Wiuf, Carsten & Posada, D., 1 May 2003, In: Genetics. 164, 1, p. 407-417 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Some properties of the conditioned reconstructed process with Bernoulli sampling

    Wiuf, Carsten, Jul 2018, In: Theoretical Population Biology. 122, p. 36-45 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Methods for derivation of LOH and allelic copy numbers using SNP arrays

    Wiuf, Carsten, Lamy, P. & Andersen, C. L., 1 Sep 2009, Statistics and Informatics in Molecular Cancer Research. Oxford University Press, Vol. 9780199532872.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  31. On the number of ancestors to a DNA sequence

    Wiuf, Carsten & Hein, J., 1 Nov 1997, In: Genetics. 147, 3, p. 1459-1468 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Binomial subsampling

    Wiuf, Carsten & Stumpf, M. P. H., 1 Jan 2006, In: Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences. 462, 2068, p. 1181-1195 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Inferring population history from genealogical trees

    Wiuf, Carsten, 1 Mar 2003, In: Journal of Mathematical Biology. 46, 3, p. 241-264 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. A simulation study of the reliability of recombination detection methods

    Wiuf, Carsten, Christensen, T. & Hein, J., 1 Jan 2001, In: MOLECULAR BIOLOGY AND EVOLUTION . 18, 10, p. 1929-1939 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Recombination in human mitochondrial DNA?

    Wiuf, Carsten, 17 Nov 2001, In: Genetics. 159, 2, p. 749-756 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. On the minimum number of topologies explaining a sample of DNA sequences

    Wiuf, Carsten, 1 Dec 2002, In: Theoretical Population Biology. 62, 4, p. 357-363 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Rare alleles and selection

    Wiuf, Carsten, 1 Jan 2001, In: Theoretical Population Biology. 59, 4, p. 287-296 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. On the genealogy of a sample of neutral rare alleles

    Wiuf, Carsten, 1 Jan 2000, In: Theoretical Population Biology. 58, 1, p. 61-75 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Algebraic Statistics and Methods in Systems Biology

    Wiuf, Carsten, 12 Sep 2011, Handbook of Statistical Systems Biology. Wiley, p. 114-132 19 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  40. A likelihood approach to analysis of network data

    Wiuf, Carsten, Brameier, M., Hagberg, O. & Stumpf, M. P. H., 16 May 2006, In: Proceedings of the National Academy of Sciences of the United States of America. 103, 20, p. 7566-7570 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Power-Law Kinetics and Determinant Criteria for the Preclusion of Multistationarity in Networks of Interacting Species

    Wiuf, Carsten & Feliu, Elisenda, 16 Oct 2013, In: S I A M Journal on Applied Dynamical Systems. 12, 4, p. 1685-1721 37 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    LandScape: a simple method to aggregate p-values and other stochastic variables without a priori grouping

    Wiuf, Carsten, Pallesen, J. S., Foldager, L. & Grove, J., Aug 2016, In: Statistical Applications in Genetics and Molecular Biology. 15, 4, p. 349-361

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Full classification of dynamics for one-dimensional continuous-Time Markov chains with polynomial transition rates

    Xu, C., Hansen, M. C. & Wiuf, Carsten, 2023, In: Advances in Applied Probability. 55, 1, p. 321-355

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Structural classification of continuous time Markov chains with applications

    Xu, C., Hansen, M. C. & Wiuf, Carsten, 2022, In: Stochastics. 94, 7, p. 1003-1030

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. E-pub ahead of print

    The asymptotic tails of limit distributions of continuous-time Markov chains

    Xu, C., Hansen, M. C. & Wiuf, Carsten, 2023, (E-pub ahead of print) In: Advances in Applied Probability.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Chromosomal imbalance in the progression of high-risk non-muscle invasive bladder cancer

    Zieger, K., Wiuf, Carsten, Jensen, K. M. E., Ørntoft, T. & Dyrskjøt, L., 16 May 2009, In: BMC Cancer. 9, 149.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Role of activating fibroblast growth factor receptor 3 mutations in the development of bladder tumors

    Zieger, K., Dyrskjøt, L., Wiuf, Carsten, Jensen, J. L., Andersen, C. L., Jensen, K. M. E. & Ørntoft, T. F., 1 Nov 2005, In: Clinical Cancer Research. 11, 21, p. 7709-7719 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. The effects of incomplete protein interaction data on structural and evolutionary inferences

    de Silva, E., Thorne, T., Ingram, P., Agrafioti, I., Swire, J., Wiuf, Carsten & Stumpf, M. P. H., 3 Nov 2006, In: BMC Biology. 4, 39.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Estimation of the covariance structure from SNP allele frequencies

    van Waaij, J., Li, Z. & Wiuf, Carsten, 2022, In: Statistical Applications in Genetics and Molecular Biology. 21, 1, 20 p., 20220005.

    Research output: Contribution to journal › Journal article › Research › peer-review

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