Recombination as a point process along sequences

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Standard

Recombination as a point process along sequences. / Wiuf, Carsten; Hein, Jotun.

I: Theoretical Population Biology, Bind 55, Nr. 3, 01.01.1999, s. 248-259.

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

Harvard

Wiuf, C & Hein, J 1999, 'Recombination as a point process along sequences', Theoretical Population Biology, bind 55, nr. 3, s. 248-259. https://doi.org/10.1006/tpbi.1998.1403

APA

Wiuf, C., & Hein, J. (1999). Recombination as a point process along sequences. Theoretical Population Biology, 55(3), 248-259. https://doi.org/10.1006/tpbi.1998.1403

Vancouver

Wiuf C, Hein J. Recombination as a point process along sequences. Theoretical Population Biology. 1999 jan. 1;55(3):248-259. https://doi.org/10.1006/tpbi.1998.1403

Author

Wiuf, Carsten ; Hein, Jotun. / Recombination as a point process along sequences. I: Theoretical Population Biology. 1999 ; Bind 55, Nr. 3. s. 248-259.

Bibtex

@article{d7c5afb2a0184ff9850c1b058d22c675,
title = "Recombination as a point process along sequences",
abstract = "Histories of sequences in the coalescent model with recombination can be simulated using an algorithm that takes as input a sample of extant sequences. The algorithm traces the history of the sequences going back in time, encountering recombinations and coalescence (duplications) until the ancestral material is located on one sequence for homologous positions in the present sequences. Here an alternative algorithm is formulated not as going back in time and operating on sequences, but by moving spatially along the sequences, updating the history of the sequences as recombination points are encountered. This algorithm focuses on spatial aspects of the coalescent with recombination rather than on temporal aspects as is the case of familiar algorithms. Mathematical results related to spatial aspects of the coalescent with recombination are derived.",
author = "Carsten Wiuf and Jotun Hein",
year = "1999",
month = jan,
day = "1",
doi = "10.1006/tpbi.1998.1403",
language = "English",
volume = "55",
pages = "248--259",
journal = "Theoretical Population Biology",
issn = "0040-5809",
publisher = "Academic Press",
number = "3",

}

RIS

TY - JOUR

T1 - Recombination as a point process along sequences

AU - Wiuf, Carsten

AU - Hein, Jotun

PY - 1999/1/1

Y1 - 1999/1/1

N2 - Histories of sequences in the coalescent model with recombination can be simulated using an algorithm that takes as input a sample of extant sequences. The algorithm traces the history of the sequences going back in time, encountering recombinations and coalescence (duplications) until the ancestral material is located on one sequence for homologous positions in the present sequences. Here an alternative algorithm is formulated not as going back in time and operating on sequences, but by moving spatially along the sequences, updating the history of the sequences as recombination points are encountered. This algorithm focuses on spatial aspects of the coalescent with recombination rather than on temporal aspects as is the case of familiar algorithms. Mathematical results related to spatial aspects of the coalescent with recombination are derived.

AB - Histories of sequences in the coalescent model with recombination can be simulated using an algorithm that takes as input a sample of extant sequences. The algorithm traces the history of the sequences going back in time, encountering recombinations and coalescence (duplications) until the ancestral material is located on one sequence for homologous positions in the present sequences. Here an alternative algorithm is formulated not as going back in time and operating on sequences, but by moving spatially along the sequences, updating the history of the sequences as recombination points are encountered. This algorithm focuses on spatial aspects of the coalescent with recombination rather than on temporal aspects as is the case of familiar algorithms. Mathematical results related to spatial aspects of the coalescent with recombination are derived.

UR - http://www.scopus.com/inward/record.url?scp=0033150745&partnerID=8YFLogxK

U2 - 10.1006/tpbi.1998.1403

DO - 10.1006/tpbi.1998.1403

M3 - Journal article

C2 - 10366550

AN - SCOPUS:0033150745

VL - 55

SP - 248

EP - 259

JO - Theoretical Population Biology

JF - Theoretical Population Biology

SN - 0040-5809

IS - 3

ER -

ID: 203901394