Carsten Wiuf

Carsten Wiuf

Professor

ORCID: 0000-0002-1302-4445

Publication year:
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51 - 100 out of 149Page size: 50
  1. 2013
  2. Published

    A computational method to preclude multistationarity in networks of interacting species

    Feliu, Elisenda & Wiuf, Carsten, 2013, In: Bioinformatics. 29, 18, p. 2327-2334

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Phosphorelays provide tunable signal processing capabilities for the cell

    Kothamachu, V. B., Feliu, Elisenda, Wiuf, Carsten, Cardelli, L. & Soyer, O. S., 2013, In: P L o S Computational Biology (Online). 9, 11, p. e1003322

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Simplifying biochemical models with intermediate species

    Feliu, Elisenda & Wiuf, Carsten, 2013, In: Journal of the Royal Society. Interface. 10, 87, p. 20130484

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Variable elimination in post-translational modification reaction networks with mass-action kinetics

    Feliu, Elisenda & Wiuf, Carsten, 2013, In: Journal of Mathematical Biology. 66, 1-2, p. 281-310

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. 2012
  7. Published

    Preclusion of switch behavior in networks with mass-action kinetics

    Feliu, Elisenda & Wiuf, Carsten, 1 Nov 2012, In: Applied Mathematics and Computation. 219, 4, p. 1449-1467 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    A bimodular mechanism of calcium control in eukaryotes

    Tidow, H., Poulsen, L. R., Andreeva, A., Knudsen, M., Hein, K. L., Wiuf, Carsten, Palmgren, Michael & Nissen, P., 2012, In: Nature. 491, 7424, p. 468–472 5 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  9. Published

    An algebraic approach to signaling cascades with N layers

    Feliu, Elisenda, Knudsen, M., Andersen, L. N. & Wiuf, Carsten, 2012, In: Bulletin of Mathematical Biology. 74, 1, p. 45-72 28 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Association between genetic variation in a region on chromosome 11 and schizophrenia in large samples from Europe

    Rietschel, M., Mattheisen, M., Degenhardt, F., Kahn, R. S., Linszen, D. H., Os, J. V., Wiersma, D., Bruggeman, R., Cahn, W., de Haan, L., Krabbendam, L., Myin-Germeys, I., Mühleisen, T. W., Kirsch, P., Esslinger, C., Herms, S., Demontis, D., Steffens, M., Strohmaier, J., Haenisch, B. & 82 others, Breuer, R., Czerski, P. M., Giegling, I., Strengman, E., Schmael, C., Mors, O., Mortensen, P. B., Hougaard, D. M., Orntoft, T., Kapelski, P., Priebe, L., Basmanav, F. B., Forstner, A. J., Hoffmann, P. F. F., Meier, S., Nikitopoulos, J., Moebus, S., Alexander, M., Mössner, R., Wichmann, H., Schreiber, S., Rivandeneira, F., Hofman, A., Uitterlinden, A. G., Wienker, T. F., Schumacher, J., Hauser, J., Maier, W., Cantor, R., Erk, S., Schulze, T. G., Stefansson, H., Steinberg, S., Gustafsson, O., Sigurdsson, E., Petursson, H., Kong, A., Stefansson, K., Pietiläinen, O. P. H., Tuulio-Henriksson, A., Paunio, T., Lonnqvist, J., Suvisaari, J., Peltonen, L., Ruggeri, M., Tosato, S., Walshe, M., Murray, R., Collier, D. A., Clair, D. S., Hansen, T., Ingason, A., Jakobsen, K. D., Duong, L., Werge, T., Melle, I., Andreassen, O. A., Djurovic, S., Bitter, I., Réthelyi, J. M., Abramova, L., Kaleda, V., Golimbet, V., Jönsson, E. G., Terenius, L., Agartz, I., Winkel, R. V., Kenis, G., Hert, M. D., Veldink, J., Wiuf, Carsten, Didriksen, M., Craddock, N., Owen, M. J., O'Donovan, M. C., Børglum, A., Rujescu, D., Walter, H., Meyer-Lindenberg, A., Nöthen, M. M., Ophoff, R. A. & Cichon, S., 2012, In: Molecular Psychiatry. 17, 9, p. 906-917 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Enzyme-sharing as a cause of multi-stationarity in signalling systems

    Feliu, Elisenda & Wiuf, Carsten, 2012, In: Journal of the Royal Society. Interface. 9, 71, p. 1224-1232 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Exact analysis of intrinsic qualitative features of phosphorelays using mathematical models

    Knudsen, M., Feliu, Elisenda & Wiuf, Carsten, 2012, In: Journal of Theoretical Biology. 300, p. 7-18 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Gene expression classifier predicts for hypoxic modification of radiotherapy with nimorazole in squamous cell carcinomas of the head and neck

    Toustrup, K., Sørensen, B. S., Lassen, P., Wiuf, Carsten, Alsner, J. & Overgaard, J., 2012, In: Radiotherapy & Oncology. 102, 1, p. 122-129 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Modelling the contribution of family history and variation in single nucleotide polymorphisms to risk of schizophrenia: a Danish national birth cohort-based study

    Agerbo, E., Mortensen, P. B., Wiuf, Carsten, Pedersen, M. S., McGrath, J., Hollegaard, M. V., Nørgaard-Pedersen, B., Hougaard, D. M., Mors, O. & Pedersen, C. B., 2012, In: Schizophrenia Research. 134, 2-3, p. 246-252 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Signaling cascades: consequences of varying substrate and phosphatase levels

    Feliu, Elisenda, Knudsen, M. & Wiuf, Carsten, 2012, In: Advances in Experimental Medicine and Biology. 736, p. 81-94 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Variable elimination in chemical reaction networks with mass-action kinetics

    Feliu, Elisenda & Wiuf, Carsten, 2012, In: S I A M Journal on Applied Mathematics. 72, 4, p. 959–981 23 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. 2011

  18. Utilization of computer science for construction and characterization of DNA nano-structures

    Andersen, F. F., Villesen, P., Knudsen, B., Wiuf, Carsten, Desideri, A. & Knudsen, B. R., 1 Dec 2011, DNA Microarrays, Synthesis and Synthetic DNA. Nova Science Publishers, p. 317-330 14 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  19. Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis

    Thorsen, K., Schepeler, T., Øster, B., Rasmussen, M. H., Vang, S., Wang, K., Hansen, K. Q., Lamy, P., Pedersen, J. S., Eller, A., Mansilla, F., Laurila, K., Wiuf, Carsten, Laurberg, S., Dyrskjøt, L., Ørntoft, T. F. & Andersen, C. L., 14 Oct 2011, In: BMC Genomics. 12, 505.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Bounded coordinate-descent for biological sequence classification in high dimensional predictor space

    Ifrim, G. & Wiuf, Carsten, 16 Sep 2011, Proceedings of the 17th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, KDD'11. p. 708-716 9 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  21. Algebraic Statistics and Methods in Systems Biology

    Wiuf, Carsten, 12 Sep 2011, Handbook of Statistical Systems Biology. Wiley, p. 114-132 19 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  22. Comprehensive genome methylation analysis in bladder cancer: Identification and validation of novel methylated genes and application of these as urinary tumor markers

    Reinert, T., Modin, C., Castano, F. M., Lamy, P., Wojdacz, T. K., Hansen, L. L., Wiuf, Carsten, Borre, M., Dyrskjøt, L. & Ørntoft, T. F., 1 Sep 2011, In: Clinical Cancer Research. 17, 17, p. 5582-5592 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Development of a hypoxia gene expression classifier with predictive impact for hypoxic modification of radiotherapy in head and neck cancer

    Toustrup, K., Sørensen, B. S., Nordsmark, M., Busk, M., Wiuf, Carsten, Alsner, J. & Overgaard, J., 1 Sep 2011, In: Cancer Research. 71, 17, p. 5923-5931 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. A Beta-mixture model for dimensionality reduction, sample classification and analysis

    Laurila, K., Oster, B., Andersen, C. L., Lamy, P., Orntoft, T., Yli-Harja, O. & Wiuf, Carsten, 27 May 2011, In: BMC Bioinformatics. 12, 215.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. An algebro-topological description of protein domain structure

    Penner, R. C., Knudsen, M., Wiuf, Carsten & Andersen, J. E., 27 May 2011, In: PLoS ONE. 6, 5, e19670.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. High-resolution melting analysis for mutation screening of RGSL1, RGS16, and RGS8 in breast cancer

    Wiechec, E., Wiuf, Carsten, Overgaard, J. & Hansen, L. L., 1 Feb 2011, In: Cancer Epidemiology Biomarkers and Prevention. 20, 2, p. 397-407 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Rseg-an R package to optimize segmentation of SNP array data

    Lamy, P., Wiuf, Carsten, Ørntoft, T. F. & Andersen, C. L., 1 Feb 2011, In: Bioinformatics. 27, 3, p. 419-420 2 p., btq668.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. A review of software for microarray genotyping

    Lamy, P., Grove, J. & Wiuf, Carsten, 1 Jan 2011, In: Human Genomics. 5, 4, p. 304-309 6 p.

    Research output: Contribution to journal › Review › Research › peer-review

  29. 2010

  30. Tumor heterogeneity in neoplasms of breast, colon, and skin

    Li, J., Wang, K., Jensen, T. D., Li, S., Bolund, L. & Wiuf, Carsten, 29 Nov 2010, In: BMC Research Notes. 3, 321.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Incomplete and noisy network data as a percolation process

    Stumpf, M. P. H. & Wiuf, Carsten, 6 Oct 2010, In: Journal of the Royal Society Interface. 7, 51, p. 1411-1419 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  32. Fatgraph models of proteins

    Penner, R. C., Knudsen, M., Wiuf, Carsten & Andersen, J. E., 1 Oct 2010, In: Communications on Pure and Applied Mathematics. 63, 10, p. 1249-1297 49 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. The Coalescent of Bacterial Populations

    Schierup, M. H. & Wiuf, Carsten, 9 Apr 2010, Bacterial Population Genetics in Infectious Disease. Wiley, p. 1-18 18 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  34. Reply to Robert et al. Model criticism informs model choice and model comparison

    Ratmann, O., Andrieu, C., Wiuf, Carsten & Richardson, S., 19 Jan 2010, In: Proceedings of the National Academy of Sciences of the United States of America. 107, 3

    Research output: Contribution to journal › Letter › Research › peer-review

  35. Short tandem repeats and genetic variation

    Madsen, B. E., Villesen, P. & Wiuf, Carsten, 1 Jan 2010, Genetic Variation: Methods and Protocols. Humana Press, p. 297-306 10 p. (Methods in Molecular Biology, Vol. 628).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  36. The CATH database.

    Knudsen, M. & Wiuf, Carsten, 1 Jan 2010, In: Human Genomics. 4, 3, p. 207-212 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. 2009

  38. Quality assessment of DNA derived from up to 30 years old formalin fixed paraffin embedded (FFPE) tissue for PCR-based methylation analysis using SMART-MSP and MS-HRM

    Kristensen, L. S., Wojdacz, T. K., Thestrup, B. B., Wiuf, Carsten, Hager, H. & Hansen, L. L., 21 Dec 2009, In: BMC Cancer. 9, 453.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Temporal development and collapse of an Arctic plant-pollinator network

    Pradal, C., Olesen, J. M. & Wiuf, Carsten, 1 Dec 2009, In: BMC Ecology. 9, 24.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. From evidence to inference: Probing the evolution of protein interaction networks

    Ratmann, O., Wiuf, Carsten & Pinney, J. W., 1 Oct 2009, In: HFSP Journal. 3, 5, p. 290-306 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Methods for derivation of LOH and allelic copy numbers using SNP arrays

    Wiuf, Carsten, Lamy, P. & Andersen, C. L., 1 Sep 2009, Statistics and Informatics in Molecular Cancer Research. Oxford University Press, Vol. 9780199532872.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  42. Preface

    Andersen, C. L. & Wiuf, Carsten, 1 Sep 2009, Statistics and Informatics in Molecular Cancer Research. Oxford University Press

    Research output: Chapter in Book/Report/Conference proceeding › Preface/postscript › Research

  43. Statistics and Informatics in Molecular Cancer Research

    Wiuf, Carsten & Andersen, C. L., 1 Sep 2009, Oxford University Press. 208 p.

    Research output: Book/Report › Book › Research › peer-review

  44. Genome-wide scans using archived neonatal dried blood spot samples

    Hollegaard, M. V., Grauholm, J., Børglum, A., Nyegaard, M., Nørgaard-Pedersen, B., Ørntoft, T., Mortensen, P. B., Wiuf, Carsten, Mors, O., Didriksen, M., Thorsen, P. & Hougaard, D. M., 4 Jul 2009, In: BMC Genomics. 10, 297.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Model criticism based on likelihood-free inference, with an application to protein network evolution

    Ratmann, O., Andrieu, C., Wiuf, Carsten & Richardson, S., 30 Jun 2009, In: Proceedings of the National Academy of Sciences of the United States of America. 106, 26, p. 10576-10581 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. The genealogy, site frequency spectrum and ages of two nested mutant alleles

    Hobolth, A. & Wiuf, Carsten, 1 Jun 2009, In: Theoretical Population Biology. 75, 4, p. 260-265 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Chromosomal imbalance in the progression of high-risk non-muscle invasive bladder cancer

    Zieger, K., Wiuf, Carsten, Jensen, K. M. E., Ørntoft, T. & Dyrskjøt, L., 16 May 2009, In: BMC Cancer. 9, 149.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Estimation of tumor heterogeneity using CGH array data

    Wang, K., Li, J., Li, S., Bolund, L. & Wiuf, Carsten, 9 Jan 2009, In: BMC Bioinformatics. 10, 12.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Evolutionary analysis of protein interaction networks

    Wiuf, Carsten & Ratmann, O., 1 Jan 2009, Statistical and Evolutionary Analysis of Biological Networks. Imperial College Press, p. 17-43 27 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  50. Statistical and evolutionary analysis of biological networks

    Stumpf, M. P. H. & Wiuf, Carsten, 1 Jan 2009, Imperial College Press. 170 p.

    Research output: Book/Report › Book › Research › peer-review

  51. 2008

  52. Clonal evolution in t(14;18)-positive follicular lymphoma, evidence for multiple common pathways, and frequent parallel clonal evolution

    D'Amore, F., Chan, E., Iqbal, J., Geng, H., Young, K., Xiao, L., Hess, M. M., Sanger, W. G., Smith, L., Wiuf, Carsten, Hagberg, O., Fu, K., Chan, W. C. & Dave, B. J., 15 Nov 2008, In: Clinical Cancer Research. 14, 22, p. 7180-7187 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Short tandem repeats in human exons: A target for disease mutations

    Madsen, B. E., Villesen, P. & Wiuf, Carsten, 12 Sep 2008, In: BMC Genomics. 9, 410.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. A Markov chain approach to randomly grown graphs

    Knudsen, M. & Wiuf, Carsten, 9 Jul 2008, In: Journal of Applied Mathematics. 2008, 190836.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Germline mutation in RNASEL predicts increased risk of head and neck, uterine cervix and breast cancer

    Madsen, B. E., Ramos, E. M., Boulard, M., Duda, K., Overgaard, J., Nordsmark, M., Wiuf, Carsten & Hansen, L. L., 25 Jun 2008, In: PLOS ONE. 3, 6, e2492.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. The association between genetic variants in hMLH1 and hMSH2 and the development of sporadic colorectal cancer in the Danish population

    Christensen, L. L., Madsen, B. E., Wikman, F. P., Wiuf, Carsten, Koed, K., Tjønneland, A., Olsen, A., Syvänen, A. C., Andersen, C. L. & Ørntoft, T. F., 11 Jun 2008, In: BMC Medical Genetics. 9, 52.

    Research output: Contribution to journal › Journal article › Research › peer-review

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