Carsten Wiuf
Professor
Department of Mathematical Sciences
Universitetsparken 5
2100 København Ø
SOX4 expression in bladder carcinoma: Clinical aspects and in vitro functional characterization
Aaboe, M., Birkenkamp-Demtroder, K., Wiuf, Carsten, Sørensen, F. B., Thykjaer, T., Sauter, G., Jensen, K. M. E., Dyrskjøt, L. & Ørntoft, T., 1 Apr 2006, In: Cancer Research. 66, 7, p. 3434-3442 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Modelling the contribution of family history and variation in single nucleotide polymorphisms to risk of schizophrenia: a Danish national birth cohort-based study
Agerbo, E., Mortensen, P. B., Wiuf, Carsten, Pedersen, M. S., McGrath, J., Hollegaard, M. V., Nørgaard-Pedersen, B., Hougaard, D. M., Mors, O. & Pedersen, C. B., 2012, In: Schizophrenia Research. 134, 2-3, p. 246-252 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
Preface
Andersen, C. L. & Wiuf, Carsten, 1 Sep 2009, Statistics and Informatics in Molecular Cancer Research. Oxford University PressResearch output: Chapter in Book/Report/Conference proceeding › Preface/postscript › Research
Frequent occurrence of uniparental disomy in colorectal cancer
Andersen, C. L., Wiuf, Carsten, Kruhøffer, M., Korsgaard, M., Laurberg, S. & Ørntoft, T. F., 1 Jan 2007, In: Carcinogenesis. 28, 1, p. 38-48 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Utilization of computer science for construction and characterization of DNA nano-structures
Andersen, F. F., Villesen, P., Knudsen, B., Wiuf, Carsten, Desideri, A. & Knudsen, B. R., 1 Dec 2011, DNA Microarrays, Synthesis and Synthetic DNA. Nova Science Publishers, p. 317-330 14 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Lyapunov Functions, Stationary Distributions, and Non-equilibrium Potential for Reaction Networks
Anderson, D. F., Craciun, G., Gopalkrishnan , M. & Wiuf, Carsten, 2015, In: Bulletin of Mathematical Biology. 77, 9, p. 1744-1767Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Parchment Glutamine Index (PQI): A novel method to estimate glutamine deamidation levels in parchment collagen obtained from low-quality MALDI-TOF data
Anila Bhuvanendran Nair, Bharath, Palomo, I. R., Markussen, Bo, Wiuf, Carsten, Fiddyment, S. & Collins, Matthew James, 2022, bioRxiv, 18 p.Research output: Working paper › Research › peer-review
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Stationary distributions of systems with discreteness-induced transitions
Bibbona, E., Kim, J. & Wiuf, Carsten, 2020, In: Journal of the Royal Society Interface. 17, 168, 11 p., 20200243.Research output: Contribution to journal › Journal article › Research › peer-review
Ab initio identification of human microRNAs based on structure motifs
Brameier, M. & Wiuf, Carsten, 18 Dec 2007, In: BMC Bioinformatics. 8, 478.Research output: Contribution to journal › Journal article › Research › peer-review
Co-clustering and visualization of gene expression data and gene ontology terms for Saccharomyces cerevisiae using self-organizing maps
Brameier, M. & Wiuf, Carsten, 1 Apr 2007, In: Journal of Biomedical Informatics. 40, 2, p. 160-173 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide study of association and interaction with maternal cytomegalovirus infection suggests new schizophrenia loci
Børglum, A. D., Demontis, D., Grove, J., Pallesen, J., Hollegaard, M. V., Pedersen, C. B., Hedemand, A., Mattheisen, M., Uitterlinden, A., Nyegaard, M., Ørntoft, T., Wiuf, C. H., Didriksen, M., Nordentoft, M., Nöthen, M. M., Rietschel, M., Ophoff, R. A., Cichon, S., Yolken, R. H., Hougaard, D. M. & 3 others, , Mar 2014, In: Molecular Psychiatry. 19, 3, p. 325-333 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Addition of flow reactions preserving multistationarity and bistability
Cappelletti, D., Feliu, Elisenda & Wiuf, Carsten, 2020, In: Mathematical Biosciences. 320, 8 p., 108295.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Product-Form Poisson-Like Distributions and Complex Balanced Reaction Systems
Cappelletti, D. & Wiuf, Carsten, 2016, In: S I A M Journal on Applied Mathematics. 76, 1, p. 411-432Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Uniform Approximation of Solutions by Elimination of Intermediate Species in Deterministic Reaction Networks
Cappelletti, D. & Wiuf, Carsten, 2017, In: S I A M Journal on Applied Dynamical Systems. 16, 4, p. 2259-2286Research output: Contribution to journal › Journal article › Research › peer-review
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The dynamics of stochastic mono-molecular reaction systems in stochastic environments
Cappelletti, D., Pal Majumder, A. & Wiuf, Carsten, 2021, In: Stochastic Processes and Their Applications. 137, p. 106-148Research output: Contribution to journal › Journal article › Research › peer-review
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Elimination of intermediate species in multiscale stochastic reaction networks
Cappelletti, D. & Wiuf, Carsten, 1 Oct 2016, In: Annals of Applied Probability. 26, 5, p. 2915-2958 44 p.Research output: Contribution to journal › Journal article › Research › peer-review
The association between genetic variants in hMLH1 and hMSH2 and the development of sporadic colorectal cancer in the Danish population
Christensen, L. L., Madsen, B. E., Wikman, F. P., Wiuf, Carsten, Koed, K., Tjønneland, A., Olsen, A., Syvänen, A. C., Andersen, C. L. & Ørntoft, T. F., 11 Jun 2008, In: BMC Medical Genetics. 9, 52.Research output: Contribution to journal › Journal article › Research › peer-review
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Existence of a unique quasi-stationary distribution in stochastic reaction networks
Christian Hansen, M. & Wiuf, Carsten, 1 Jan 2020, In: Electronic Journal of Probability. 25, 30 p., 45.Research output: Contribution to journal › Journal article › Research › peer-review
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Identifying parameter regions for multistationarity
Conradi, C., Feliu, Elisenda, Mincheva, M. & Wiuf, Carsten, 13 Aug 2017, In: P L o S Computational Biology (Online). 13, 10, 25 p., e1005751.Research output: Contribution to journal › Journal article › Research › peer-review
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Coalescent models derived from birth–death processes
Crespo, F. F., Posada, D. & Wiuf, Carsten, 2021, In: Theoretical Population Biology. 142, p. 1-11Research output: Contribution to journal › Journal article › Research › peer-review
Clonal evolution in t(14;18)-positive follicular lymphoma, evidence for multiple common pathways, and frequent parallel clonal evolution
D'Amore, F., Chan, E., Iqbal, J., Geng, H., Young, K., Xiao, L., Hess, M. M., Sanger, W. G., Smith, L., Wiuf, Carsten, Hagberg, O., Fu, K., Chan, W. C. & Dave, B. J., 15 Nov 2008, In: Clinical Cancer Research. 14, 22, p. 7180-7187 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Two variance results in population genetics theory
Ewens, W. J., Choudhury, A. R., Lewontin, R. C. & Wiuf, Carsten, 1 Apr 2007, In: Mathematical Population Studies. 14, 2, p. 93-110 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
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A computational method to preclude multistationarity in networks of interacting species
Feliu, Elisenda & Wiuf, Carsten, 2013, In: Bioinformatics. 29, 18, p. 2327-2334Research output: Contribution to journal › Journal article › Research › peer-review
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Enzyme-sharing as a cause of multi-stationarity in signalling systems
Feliu, Elisenda & Wiuf, Carsten, 2012, In: Journal of the Royal Society. Interface. 9, 71, p. 1224-1232 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Preclusion of switch behavior in networks with mass-action kinetics
Feliu, Elisenda & Wiuf, Carsten, 1 Nov 2012, In: Applied Mathematics and Computation. 219, 4, p. 1449-1467 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Variable elimination in chemical reaction networks with mass-action kinetics
Feliu, Elisenda & Wiuf, Carsten, 2012, In: S I A M Journal on Applied Mathematics. 72, 4, p. 959–981 23 p.Research output: Contribution to journal › Journal article › Research › peer-review
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A proof of unlimited multistability for phosphorylation cycles
Feliu, Elisenda, Rendall, A. D. & Wiuf, Carsten, 2020, In: Nonlinearity. 33, p. 5629–5658Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Quasi-steady state and singular perturbation reduction for reaction networks with non-interacting species
Feliu, Elisenda, Lax, C., Walcher, S. & Wiuf, Carsten, 2022, In: SIAM Journal on Applied Dynamical Systems. 21, 2, p. 782–816Research output: Contribution to journal › Journal article › Research › peer-review
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Node balanced steady states: Unifying and generalizing complex and detailed balanced steady states
Feliu, Elisenda, Cappelletti, D. & Wiuf, Carsten, Jul 2018, In: Mathematical Biosciences. 301, p. 68-82Research output: Contribution to journal › Journal article › Research › peer-review
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Variable elimination in post-translational modification reaction networks with mass-action kinetics
Feliu, Elisenda & Wiuf, Carsten, 2013, In: Journal of Mathematical Biology. 66, 1-2, p. 281-310Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Signaling cascades: consequences of varying substrate and phosphatase levels
Feliu, Elisenda, Knudsen, M. & Wiuf, Carsten, 2012, In: Advances in Experimental Medicine and Biology. 736, p. 81-94 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Simplifying biochemical models with intermediate species
Feliu, Elisenda & Wiuf, Carsten, 2013, In: Journal of the Royal Society. Interface. 10, 87, p. 20130484Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Finding the positive feedback loops underlying multi-stationarity
Feliu, Elisenda & Wiuf, Carsten, 2015, In: B M C Systems Biology. 9, 22.Research output: Contribution to journal › Journal article › Research › peer-review
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An algebraic approach to signaling cascades with N layers
Feliu, Elisenda, Knudsen, M., Andersen, L. N. & Wiuf, Carsten, 2012, In: Bulletin of Mathematical Biology. 74, 1, p. 45-72 28 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Critical Parameters for Singular Perturbation Reductions of Chemical Reaction Networks
Feliu, Elisenda, Walcher, S. & Wiuf, Carsten, Dec 2022, In: Journal of Nonlinear Science. 32, 6, 41 p., 83.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Core signalling motif displaying multistability through multi-state enzymes
Feng, S., Saez Cornellana, M., Wiuf, Carsten, Feliu, Elisenda & Soyer, O. S., Oct 2016, In: Journal of the Royal Society. Interface. 13, 123, 20160524.Research output: Contribution to journal › Journal article › Research › peer-review
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On the Liouville integrability of Edelstein's reaction system in R3
Ferragut, A., Valls, C. & Wiuf, Carsten, 1 Mar 2018, In: Chaos, Solitons and Fractals. 108, p. 129-135 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating admixture pedigrees of recent hybrids without a contiguous reference genome
Garcia Erill, Genís, Hanghøj, Kristian Ebbesen, Heller, Rasmus, Wiuf, Carsten & Albrechtsen, Anders, 2023, In: Molecular Ecology Resources. 23, 7, p. 1604-1619 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
Convergence properties of the degree distribution of some growing network models
Hagberg, O. & Wiuf, Carsten, 1 Aug 2006, In: Bulletin of Mathematical Biology. 68, 6, p. 1275-1291 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
Conflicting results in SNP genotype assessment
Hansen, L. L., Madsen, B. E., Pedersen, K. & Wiuf, Carsten, 1 Dec 2007, In: BioTechniques. 43, 6, p. 756-762 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cellular compartments cause multistability and allow cells to process more information
Harrington, H. A., Feliu, Elisenda, Wiuf, Carsten & Stumpf, M. P. H., 16 Apr 2013, In: Biophysical Journal. 104, 8, p. 1824-1831 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Statistical alignment: Computational properties, homology testing and goodness-of-fit
Hein, J., Wiuf, Carsten, Knudsen, B., Møller, M. B. & Wibling, G., 8 Sep 2000, In: Journal of Molecular Biology. 302, 1, p. 265-279 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
Bioinformatic identification of FGF, p38-MAPK, and calcium signalling pathways associated with carcinoma in situ in the urinary bladder
Herbsleb, M., Christensen, O. F., Thykjaer, T., Wiuf, Carsten, Borre, M., Ørntoft, T. F. & Dyrskjøt, L., 31 Jan 2008, In: BMC Cancer. 8, 37.Research output: Contribution to journal › Journal article › Research › peer-review
Importance sampling for the infinite sites model
Hobolth, A., Uyenoyama, M. K. & Wiuf, Carsten, 1 Jan 2008, In: Statistical Applications in Genetics and Molecular Biology. 7, 1, 32.Research output: Contribution to journal › Journal article › Research › peer-review
The genealogy, site frequency spectrum and ages of two nested mutant alleles
Hobolth, A. & Wiuf, Carsten, 1 Jun 2009, In: Theoretical Population Biology. 75, 4, p. 260-265 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Maximum likelihood estimation and natural pairwise estimating equations are identical for three sequences and a symmetric 2-state substitution model
Hobolth, A. & Wiuf, Carsten, 2024, In: Theoretical Population Biology. 156, p. 1-4Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fast reactions with non-interacting species in stochastic reaction networks
Hoessly, Linard David & Wiuf, Carsten, 2022, In: Mathematical Biosciences and Engineering. 19, 3, p. 2720-2749Research output: Contribution to journal › Journal article › Research › peer-review
- Published
On the sum of chemical reactions
Hoessly, Linard David, Wiuf, Carsten & Xia, P., 2023, In: European Journal of Applied Mathematics. 34, 2, p. 303-325 23 p.Research output: Contribution to journal › Journal article › Research › peer-review
Genome-wide scans using archived neonatal dried blood spot samples
Hollegaard, M. V., Grauholm, J., Børglum, A., Nyegaard, M., Nørgaard-Pedersen, B., Ørntoft, T., Mortensen, P. B., Wiuf, Carsten, Mors, O., Didriksen, M., Thorsen, P. & Hougaard, D. M., 4 Jul 2009, In: BMC Genomics. 10, 297.Research output: Contribution to journal › Journal article › Research › peer-review
Bounded coordinate-descent for biological sequence classification in high dimensional predictor space
Ifrim, G. & Wiuf, Carsten, 16 Sep 2011, Proceedings of the 17th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, KDD'11. p. 708-716 9 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Large scale identification and categorization of protein sequences using structured logistic regression
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Graphical reduction of reaction networks by linear elimination of species
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Identifying parameter regions for multistationarity
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