Carsten Wiuf

Carsten Wiuf

Professor

ORCID: 0000-0002-1302-4445

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  1. Evolutionary analysis of protein interaction networks

    Wiuf, Carsten & Ratmann, O., 1 Jan 2009, Statistical and Evolutionary Analysis of Biological Networks. Imperial College Press, p. 17-43 27 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  2. Published

    Exact analysis of intrinsic qualitative features of phosphorelays using mathematical models

    Knudsen, M., Feliu, Elisenda & Wiuf, Carsten, 2012, In: Journal of Theoretical Biology. 300, p. 7-18 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Existence of a unique quasi-stationary distribution in stochastic reaction networks

    Christian Hansen, M. & Wiuf, Carsten, 1 Jan 2020, In: Electronic Journal of Probability. 25, 30 p., 45.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Fast reactions with non-interacting species in stochastic reaction networks

    Hoessly, Linard David & Wiuf, Carsten, 2022, In: Mathematical Biosciences and Engineering. 19, 3, p. 2720-2749

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Fatgraph models of proteins

    Penner, R. C., Knudsen, M., Wiuf, Carsten & Andersen, J. E., 1 Oct 2010, In: Communications on Pure and Applied Mathematics. 63, 10, p. 1249-1297 49 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Finding the positive feedback loops underlying multi-stationarity

    Feliu, Elisenda & Wiuf, Carsten, 2015, In: B M C Systems Biology. 9, 22.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Frequent occurrence of uniparental disomy in colorectal cancer

    Andersen, C. L., Wiuf, Carsten, Kruhøffer, M., Korsgaard, M., Laurberg, S. & Ørntoft, T. F., 1 Jan 2007, In: Carcinogenesis. 28, 1, p. 38-48 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. From evidence to inference: Probing the evolution of protein interaction networks

    Ratmann, O., Wiuf, Carsten & Pinney, J. W., 1 Oct 2009, In: HFSP Journal. 3, 5, p. 290-306 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Full classification of dynamics for one-dimensional continuous-Time Markov chains with polynomial transition rates

    Xu, C., Hansen, M. C. & Wiuf, Carsten, 2023, In: Advances in Applied Probability. 55, 1, p. 321-355

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Gene expression classifier predicts for hypoxic modification of radiotherapy with nimorazole in squamous cell carcinomas of the head and neck

    Toustrup, K., Sørensen, B. S., Lassen, P., Wiuf, Carsten, Alsner, J. & Overgaard, J., 2012, In: Radiotherapy & Oncology. 102, 1, p. 122-129 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    General theory for stochastic admixture graphs and F-statistics

    Soraggi, S. & Wiuf, Carsten, 2019, In: Theoretical Population Biology. 125, p. 56-66 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Genome-wide analysis of allelic imbalance in prostate cancer using the Affymetrix 50K SNP mapping array

    Tørring, N., Borre, M., Sørensen, K. D., Andersen, C. L., Wiuf, Carsten & Ørntoft, T. F., 12 Feb 2007, In: British Journal of Cancer. 96, 3, p. 499-506 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Genome-wide scans using archived neonatal dried blood spot samples

    Hollegaard, M. V., Grauholm, J., Børglum, A., Nyegaard, M., Nørgaard-Pedersen, B., Ørntoft, T., Mortensen, P. B., Wiuf, Carsten, Mors, O., Didriksen, M., Thorsen, P. & Hougaard, D. M., 4 Jul 2009, In: BMC Genomics. 10, 297.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Genome-wide study of association and interaction with maternal cytomegalovirus infection suggests new schizophrenia loci

    Børglum, A. D., Demontis, D., Grove, J., Pallesen, J., Hollegaard, M. V., Pedersen, C. B., Hedemand, A., Mattheisen, M., Uitterlinden, A., Nyegaard, M., Ørntoft, T., Wiuf, C. H., Didriksen, M., Nordentoft, M., Nöthen, M. M., Rietschel, M., Ophoff, R. A., Cichon, S., Yolken, R. H., Hougaard, D. M. & 3 others, Mortensen, P. B., Mors, O. & GROUP investigators10, G. I., Mar 2014, In: Molecular Psychiatry. 19, 3, p. 325-333 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Genotyping and annotation of Affymetrix SNP arrays

    Lamy, P., Andersen, C. L., Wikman, F. P. & Wiuf, Carsten, 21 Sep 2006, In: Nucleic Acids Research. 34, 14, e100.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Germline mutation in RNASEL predicts increased risk of head and neck, uterine cervix and breast cancer

    Madsen, B. E., Ramos, E. M., Boulard, M., Duda, K., Overgaard, J., Nordsmark, M., Wiuf, Carsten & Hansen, L. L., 25 Jun 2008, In: PLOS ONE. 3, 6, e2492.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Graphical criteria for positive solutions to linear systems

    Saez, M., Feliu, Elisenda & Wiuf, Carsten, 1 Sep 2018, In: Linear Algebra and Its Applications. 552, p. 166-193

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Graphical reduction of reaction networks by linear elimination of species

    Saez Cornellana, M., Wiuf, Carsten & Feliu, Elisenda, 2017, In: Journal of Mathematical Biology. 74, 1, p. 195–237

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. High-density single nucleotide polymorphism array defines novel stage and location-dependent allelic imbalances in human bladder tumors

    Koed, K., Wiuf, Carsten, Christensen, L. L., Wikman, F. P., Zieger, K., Møller, K., Von Der Maase, H. & Ørntoft, T. F., 1 Jan 2005, In: Cancer Research. 65, 1, p. 34-45 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. High-resolution melting analysis for mutation screening of RGSL1, RGS16, and RGS8 in breast cancer

    Wiechec, E., Wiuf, Carsten, Overgaard, J. & Hansen, L. L., 1 Feb 2011, In: Cancer Epidemiology Biomarkers and Prevention. 20, 2, p. 397-407 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Identification of endogenous retroviral reading frames in the human genome

    Villesen, P., Aagaard, L., Wiuf, Carsten & Pedersen, F. S., 11 Oct 2004, In: Retrovirology. 1, 32.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Identification of hidden population structure in time-scaled phylogenies

    Volz, E. M., Wiuf, Carsten, Grad, Y. H., Frost, S. D. W., Dennis, A. M. & Didelot, X., 2020, In: Systematic Biology. 69, 5, p. 884-896

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Identifying parameter regions for multistationarity

    Conradi, C., Feliu, Elisenda, Mincheva, M. & Wiuf, Carsten, 13 Aug 2017, In: P L o S Computational Biology (Online). 13, 10, 25 p., e1005751.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Importance sampling for the infinite sites model

    Hobolth, A., Uyenoyama, M. K. & Wiuf, Carsten, 1 Jan 2008, In: Statistical Applications in Genetics and Molecular Biology. 7, 1, 32.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Incomplete and noisy network data as a percolation process

    Stumpf, M. P. H. & Wiuf, Carsten, 6 Oct 2010, In: Journal of the Royal Society Interface. 7, 51, p. 1411-1419 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  26. Inference on Recombination and Block Structure Using Unphased Data

    Wiuf, Carsten, 1 Jan 2004, In: Genetics. 166, 1, p. 537-545 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Inferring population history from genealogical trees

    Wiuf, Carsten, 1 Mar 2003, In: Journal of Mathematical Biology. 46, 3, p. 241-264 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Intermediates and Generic Convergence to Equilibria

    Marcondes de Freitas, M., Wiuf, Carsten & Feliu, Elisenda, 2017, In: Bulletin of Mathematical Biology. 79, 7, p. 1662–1686

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Intermediates, Catalysts, Persistence, and Boundary Steady States

    Marcondes de Freitas, M., Feliu, Elisenda & Wiuf, Carsten, 2017, In: Journal of Mathematical Biology. 74, 4, p. 887–932

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    LandScape: a simple method to aggregate p-values and other stochastic variables without a priori grouping

    Wiuf, Carsten, Pallesen, J. S., Foldager, L. & Grove, J., Aug 2016, In: Statistical Applications in Genetics and Molecular Biology. 15, 4, p. 349-361

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Large scale identification and categorization of protein sequences using structured logistic regression

    Pedersen, B. P., Ifrim, G., Liboriussen, P., Axelsen, K. B., Palmgren, Michael, Nissen, P., Wiuf, Carsten & Pedersen, C. N. S., 20 Jan 2014, In: PLOS ONE. 9, 1, 11 p., e85139.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Linear elimination in chemical reaction networks

    Sáez, M., Feliu, Elisenda & Wiuf, Carsten, 2019, Recent Advances in Differential Equations and Applications. Guirao, J. L. G., Hernández, J. A. M. & Esparza, F. P. (eds.). Springer, p. 177-193 17 p. (SEMA SIMAI Springer Series, Vol. 18).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  33. Published

    Lyapunov Functions, Stationary Distributions, and Non-equilibrium Potential for Reaction Networks

    Anderson, D. F., Craciun, G., Gopalkrishnan , M. & Wiuf, Carsten, 2015, In: Bulletin of Mathematical Biology. 77, 9, p. 1744-1767

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Maximum likelihood estimation and natural pairwise estimating equations are identical for three sequences and a symmetric 2-state substitution model

    Hobolth, A. & Wiuf, Carsten, 2024, In: Theoretical Population Biology. 156, p. 1-4

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Methods for derivation of LOH and allelic copy numbers using SNP arrays

    Wiuf, Carsten, Lamy, P. & Andersen, C. L., 1 Sep 2009, Statistics and Informatics in Molecular Cancer Research. Oxford University Press, Vol. 9780199532872.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  36. Model criticism based on likelihood-free inference, with an application to protein network evolution

    Ratmann, O., Andrieu, C., Wiuf, Carsten & Richardson, S., 30 Jun 2009, In: Proceedings of the National Academy of Sciences of the United States of America. 106, 26, p. 10576-10581 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Modelling the contribution of family history and variation in single nucleotide polymorphisms to risk of schizophrenia: a Danish national birth cohort-based study

    Agerbo, E., Mortensen, P. B., Wiuf, Carsten, Pedersen, M. S., McGrath, J., Hollegaard, M. V., Nørgaard-Pedersen, B., Hougaard, D. M., Mors, O. & Pedersen, C. B., 2012, In: Schizophrenia Research. 134, 2-3, p. 246-252 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Node balanced steady states: Unifying and generalizing complex and detailed balanced steady states

    Feliu, Elisenda, Cappelletti, D. & Wiuf, Carsten, Jul 2018, In: Mathematical Biosciences. 301, p. 68-82

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Nonnegative linear elimination for chemical reaction networks

    Sáez, M., Wiuf, Carsten & Feliu, Elisenda, 2019, In: SIAM Journal on Applied Mathematics. 79, 6, p. 2434-2455

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    On the Liouville integrability of Edelstein's reaction system in R3

    Ferragut, A., Valls, C. & Wiuf, Carsten, 1 Mar 2018, In: Chaos, Solitons and Fractals. 108, p. 129-135 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. On the genealogy of a sample of neutral rare alleles

    Wiuf, Carsten, 1 Jan 2000, In: Theoretical Population Biology. 58, 1, p. 61-75 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. On the minimum number of topologies explaining a sample of DNA sequences

    Wiuf, Carsten, 1 Dec 2002, In: Theoretical Population Biology. 62, 4, p. 357-363 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. On the number of ancestors to a DNA sequence

    Wiuf, Carsten & Hein, J., 1 Nov 1997, In: Genetics. 147, 3, p. 1459-1468 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    On the sum of chemical reactions

    Hoessly, Linard David, Wiuf, Carsten & Xia, P., 2023, In: European Journal of Applied Mathematics. 34, 2, p. 303-325 23 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Parchment Glutamine Index (PQI): A novel method to estimate glutamine deamidation levels in parchment collagen obtained from low-quality MALDI-TOF data

    Anila Bhuvanendran Nair, Bharath, Palomo, I. R., Markussen, Bo, Wiuf, Carsten, Fiddyment, S. & Collins, Matthew James, 2023, In: Peer Community Journal. 3, 18 p., e10.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Parchment Glutamine Index (PQI): A novel method to estimate glutamine deamidation levels in parchment collagen obtained from low-quality MALDI-TOF data

    Anila Bhuvanendran Nair, Bharath, Palomo, I. R., Markussen, Bo, Wiuf, Carsten, Fiddyment, S. & Collins, Matthew James, 2022, bioRxiv, 18 p.

    Research output: Working paper › Research › peer-review

  47. Published

    Phosphorelay of non-orthodox two component systems functions through a bi-molecular mechanism in vivo: the case of ArcB

    Jovanovic, G., Sheng, X., Ale, A., Feliu, Elisenda, Harrington, H. A., Kirk, P., Wiuf, Carsten, Buck, M. & Stumpf, M. P. H., 23 Mar 2015, In: Molecular BioSystems. 11, p. 1348-1359

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Phosphorelays provide tunable signal processing capabilities for the cell

    Kothamachu, V. B., Feliu, Elisenda, Wiuf, Carsten, Cardelli, L. & Soyer, O. S., 2013, In: P L o S Computational Biology (Online). 9, 11, p. e1003322

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Power-Law Kinetics and Determinant Criteria for the Preclusion of Multistationarity in Networks of Interacting Species

    Wiuf, Carsten & Feliu, Elisenda, 16 Oct 2013, In: S I A M Journal on Applied Dynamical Systems. 12, 4, p. 1685-1721 37 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Powerful Inference With the D-Statistic on Low-Coverage Whole-Genome Data

    Soraggi, S., Wiuf, Carsten & Albrechtsen, Anders, 2018, In: G3: Genes, Genomes, Genetics (Bethesda). 8, 2, p. 551-566

    Research output: Contribution to journal › Journal article › Research › peer-review

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