Carsten Wiuf

Carsten Wiuf

Professor

ORCID: 0000-0002-1302-4445

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  1. Published

    Preclusion of switch behavior in networks with mass-action kinetics

    Feliu, Elisenda & Wiuf, Carsten, 1 Nov 2012, In: Applied Mathematics and Computation. 219, 4, p. 1449-1467 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Preface

    Andersen, C. L. & Wiuf, Carsten, 1 Sep 2009, Statistics and Informatics in Molecular Cancer Research. Oxford University Press

    Research output: Chapter in Book/Report/Conference proceeding › Preface/postscript › Research

  3. Published

    Product-Form Poisson-Like Distributions and Complex Balanced Reaction Systems

    Cappelletti, D. & Wiuf, Carsten, 2016, In: S I A M Journal on Applied Mathematics. 76, 1, p. 411-432

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Quality assessment of DNA derived from up to 30 years old formalin fixed paraffin embedded (FFPE) tissue for PCR-based methylation analysis using SMART-MSP and MS-HRM

    Kristensen, L. S., Wojdacz, T. K., Thestrup, B. B., Wiuf, Carsten, Hager, H. & Hansen, L. L., 21 Dec 2009, In: BMC Cancer. 9, 453.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Quasi-steady state and singular perturbation reduction for reaction networks with non-interacting species

    Feliu, Elisenda, Lax, C., Walcher, S. & Wiuf, Carsten, 2022, In: SIAM Journal on Applied Dynamical Systems. 21, 2, p. 782–816

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Rare alleles and selection

    Wiuf, Carsten, 1 Jan 2001, In: Theoretical Population Biology. 59, 4, p. 287-296 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Recombination analysis using directed graphical models [4]

    Strimmer, K., Wiuf, Carsten & Moulton, V., 1 Jan 2001, In: MOLECULAR BIOLOGY AND EVOLUTION . 18, 1, p. 97-99 3 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  8. Recombination as a point process along sequences

    Wiuf, Carsten & Hein, J., 1 Jan 1999, In: Theoretical Population Biology. 55, 3, p. 248-259 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Recombination in human mitochondrial DNA?

    Wiuf, Carsten, 17 Nov 2001, In: Genetics. 159, 2, p. 749-756 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Reply to Robert et al. Model criticism informs model choice and model comparison

    Ratmann, O., Andrieu, C., Wiuf, Carsten & Richardson, S., 19 Jan 2010, In: Proceedings of the National Academy of Sciences of the United States of America. 107, 3

    Research output: Contribution to journal › Letter › Research › peer-review

  11. Role of activating fibroblast growth factor receptor 3 mutations in the development of bladder tumors

    Zieger, K., Dyrskjøt, L., Wiuf, Carsten, Jensen, J. L., Andersen, C. L., Jensen, K. M. E. & Ørntoft, T. F., 1 Nov 2005, In: Clinical Cancer Research. 11, 21, p. 7709-7719 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Rseg-an R package to optimize segmentation of SNP array data

    Lamy, P., Wiuf, Carsten, Ørntoft, T. F. & Andersen, C. L., 1 Feb 2011, In: Bioinformatics. 27, 3, p. 419-420 2 p., btq668.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. SNPTools: A software tool for visualization and analysis of microarray data

    Sørensen, F. J., Andersen, C. L. & Wiuf, Carsten, 15 Jun 2007, In: Bioinformatics. 23, 12, p. 1550-1552 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. SOX4 expression in bladder carcinoma: Clinical aspects and in vitro functional characterization

    Aaboe, M., Birkenkamp-Demtroder, K., Wiuf, Carsten, Sørensen, F. B., Thykjaer, T., Sauter, G., Jensen, K. M. E., Dyrskjøt, L. & Ørntoft, T., 1 Apr 2006, In: Cancer Research. 66, 7, p. 3434-3442 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Sampling properties of random graphs: The degree distribution

    Stumpf, M. P. H. & Wiuf, Carsten, 1 Sep 2005, In: Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 72, 3, 036118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Short tandem repeats and genetic variation

    Madsen, B. E., Villesen, P. & Wiuf, Carsten, 1 Jan 2010, Genetic Variation: Methods and Protocols. Humana Press, p. 297-306 10 p. (Methods in Molecular Biology, Vol. 628).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  17. Short tandem repeats in human exons: A target for disease mutations

    Madsen, B. E., Villesen, P. & Wiuf, Carsten, 12 Sep 2008, In: BMC Genomics. 9, 410.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Signaling cascades: consequences of varying substrate and phosphatase levels

    Feliu, Elisenda, Knudsen, M. & Wiuf, Carsten, 2012, In: Advances in Experimental Medicine and Biology. 736, p. 81-94 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Simplifying biochemical models with intermediate species

    Feliu, Elisenda & Wiuf, Carsten, 2013, In: Journal of the Royal Society. Interface. 10, 87, p. 20130484

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Simulating haplotype blocks in the human genome

    Posada, D. & Wiuf, Carsten, 1 Feb 2003, In: Bioinformatics. 19, 2, p. 289-290 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Some notes on the combinatorial properties of haplotype tagging

    Wiuf, Carsten, Laidlaw, Z. & Stumpf, M. P. H., 1 Jan 2003, In: Mathematical Biosciences. 185, 2, p. 205-216 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Some properties of the conditioned reconstructed process with Bernoulli sampling

    Wiuf, Carsten, Jul 2018, In: Theoretical Population Biology. 122, p. 36-45 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Stationary distributions of systems with discreteness-induced transitions

    Bibbona, E., Kim, J. & Wiuf, Carsten, 2020, In: Journal of the Royal Society Interface. 17, 168, 11 p., 20200243.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Statistical alignment: Computational properties, homology testing and goodness-of-fit

    Hein, J., Wiuf, Carsten, Knudsen, B., Møller, M. B. & Wibling, G., 8 Sep 2000, In: Journal of Molecular Biology. 302, 1, p. 265-279 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Statistical and evolutionary analysis of biological networks

    Stumpf, M. P. H. & Wiuf, Carsten, 1 Jan 2009, Imperial College Press. 170 p.

    Research output: Book/Report › Book › Research › peer-review

  26. Statistical model selection methods applied to biological networks

    Stumpf, M. P. H., Ingram, P. J., Nouvel, I. & Wiuf, Carsten, 1 Dec 2005, Transactions on Computational systems Biology III. p. 65-77 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 3737 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  27. Statistics and Informatics in Molecular Cancer Research

    Wiuf, Carsten & Andersen, C. L., 1 Sep 2009, Oxford University Press. 208 p.

    Research output: Book/Report › Book › Research › peer-review

  28. Published

    Structural classification of continuous time Markov chains with applications

    Xu, C., Hansen, M. C. & Wiuf, Carsten, 2022, In: Stochastics. 94, 7, p. 1003-1030

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Subnets of scale-free networks are not scale-free: Sampling properties of networks

    Stumpf, M. P. H., Wiuf, Carsten & May, R. M., 22 Mar 2005, In: Proceedings of the National Academy of Sciences of the United States of America. 102, 12, p. 4221-4224 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Temporal development and collapse of an Arctic plant-pollinator network

    Pradal, C., Olesen, J. M. & Wiuf, Carsten, 1 Dec 2009, In: BMC Ecology. 9, 24.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. The CATH database.

    Knudsen, M. & Wiuf, Carsten, 1 Jan 2010, In: Human Genomics. 4, 3, p. 207-212 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. The Coalescent of Bacterial Populations

    Schierup, M. H. & Wiuf, Carsten, 9 Apr 2010, Bacterial Population Genetics in Infectious Disease. Wiley, p. 1-18 18 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  33. The ancestry of a sample of sequences subject to recombination

    Wiuf, Carsten & Hein, J., 1 Mar 1999, In: Genetics. 151, 3, p. 1217-1228 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. The association between genetic variants in hMLH1 and hMSH2 and the development of sporadic colorectal cancer in the Danish population

    Christensen, L. L., Madsen, B. E., Wikman, F. P., Wiuf, Carsten, Koed, K., Tjønneland, A., Olsen, A., Syvänen, A. C., Andersen, C. L. & Ørntoft, T. F., 11 Jun 2008, In: BMC Medical Genetics. 9, 52.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    The asymptotic tails of limit distributions of continuous-time Markov chains

    Xu, C., Hansen, M. C. & Wiuf, Carsten, 2024, In: Advances in Applied Probability. 56, 2, p. 693–734

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. The coalescent with gene conversion

    Wiuf, Carsten & Hein, J., 1 May 2000, In: Genetics. 155, 1, p. 451-462 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    The dynamics of stochastic mono-molecular reaction systems in stochastic environments

    Cappelletti, D., Pal Majumder, A. & Wiuf, Carsten, 2021, In: Stochastic Processes and Their Applications. 137, p. 106-148

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. The effects of incomplete protein interaction data on structural and evolutionary inferences

    de Silva, E., Thorne, T., Ingram, P., Agrafioti, I., Swire, J., Wiuf, Carsten & Stumpf, M. P. H., 3 Nov 2006, In: BMC Biology. 4, 39.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. The genealogy, site frequency spectrum and ages of two nested mutant alleles

    Hobolth, A. & Wiuf, Carsten, 1 Jun 2009, In: Theoretical Population Biology. 75, 4, p. 260-265 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. The probability and chromosomal extent of trans-specific polymorphism

    Wiuf, Carsten, Zhao, K., Innan, H. & Nordborg, M., 1 Dec 2004, In: Genetics. 168, 4, p. 2363-2372 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Tumor heterogeneity in neoplasms of breast, colon, and skin

    Li, J., Wang, K., Jensen, T. D., Li, S., Bolund, L. & Wiuf, Carsten, 29 Nov 2010, In: BMC Research Notes. 3, 321.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis

    Thorsen, K., Schepeler, T., Øster, B., Rasmussen, M. H., Vang, S., Wang, K., Hansen, K. Q., Lamy, P., Pedersen, J. S., Eller, A., Mansilla, F., Laurila, K., Wiuf, Carsten, Laurberg, S., Dyrskjøt, L., Ørntoft, T. F. & Andersen, C. L., 14 Oct 2011, In: BMC Genomics. 12, 505.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Two variance results in population genetics theory

    Ewens, W. J., Choudhury, A. R., Lewontin, R. C. & Wiuf, Carsten, 1 Apr 2007, In: Mathematical Population Studies. 14, 2, p. 93-110 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Uniform Approximation of Solutions by Elimination of Intermediate Species in Deterministic Reaction Networks

    Cappelletti, D. & Wiuf, Carsten, 2017, In: S I A M Journal on Applied Dynamical Systems. 16, 4, p. 2259-2286

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum

    Ratmann, O., Jørgensen, O., Hinkley, T., Stumpf, M., Richardson, S. & Wiuf, Carsten, 1 Nov 2007, In: PLOS Computational Biology. 3, 11, p. 2266-2278 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Utilization of computer science for construction and characterization of DNA nano-structures

    Andersen, F. F., Villesen, P., Knudsen, B., Wiuf, Carsten, Desideri, A. & Knudsen, B. R., 1 Dec 2011, DNA Microarrays, Synthesis and Synthetic DNA. Nova Science Publishers, p. 317-330 14 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  47. Published

    Variable elimination in chemical reaction networks with mass-action kinetics

    Feliu, Elisenda & Wiuf, Carsten, 2012, In: S I A M Journal on Applied Mathematics. 72, 4, p. 959–981 23 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Variable elimination in post-translational modification reaction networks with mass-action kinetics

    Feliu, Elisenda & Wiuf, Carsten, 2013, In: Journal of Mathematical Biology. 66, 1-2, p. 281-310

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    epiG: statistical inference and profiling of DNA methylation from whole-genome bisulfite sequencing data

    Vincent, M., Mundbjerg, K., Pedersen, J. S., Liang, G., Jones, P. A., Orntoft, T. F., Sorensen, K. D. & Wiuf, Carsten, 21 Feb 2017, In: Genome Biology (Online Edition). 18, 38.

    Research output: Contribution to journal › Journal article › Research › peer-review

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