Carsten Wiuf

Carsten Wiuf

Professor

ORCID: 0000-0002-1302-4445

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  1. An algebro-topological description of protein domain structure

    Penner, R. C., Knudsen, M., Wiuf, Carsten & Andersen, J. E., 27 May 2011, In: PLoS ONE. 6, 5, e19670.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Simulating haplotype blocks in the human genome

    Posada, D. & Wiuf, Carsten, 1 Feb 2003, In: Bioinformatics. 19, 2, p. 289-290 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Temporal development and collapse of an Arctic plant-pollinator network

    Pradal, C., Olesen, J. M. & Wiuf, Carsten, 1 Dec 2009, In: BMC Ecology. 9, 24.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Estimation of site frequency spectra from low-coverage sequencing data using stochastic EM reduces overfitting, runtime, and memory usage

    Rasmussen, Malthe Sebro, Garcia Erill, Genís, Korneliussen, Thorfinn Sand, Wiuf, Carsten & Albrechtsen, Anders, 2022, In: Genetics. 222, 4, 15 p., iyac148.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Model criticism based on likelihood-free inference, with an application to protein network evolution

    Ratmann, O., Andrieu, C., Wiuf, Carsten & Richardson, S., 30 Jun 2009, In: Proceedings of the National Academy of Sciences of the United States of America. 106, 26, p. 10576-10581 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum

    Ratmann, O., Jørgensen, O., Hinkley, T., Stumpf, M., Richardson, S. & Wiuf, Carsten, 1 Nov 2007, In: PLOS Computational Biology. 3, 11, p. 2266-2278 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. From evidence to inference: Probing the evolution of protein interaction networks

    Ratmann, O., Wiuf, Carsten & Pinney, J. W., 1 Oct 2009, In: HFSP Journal. 3, 5, p. 290-306 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Reply to Robert et al. Model criticism informs model choice and model comparison

    Ratmann, O., Andrieu, C., Wiuf, Carsten & Richardson, S., 19 Jan 2010, In: Proceedings of the National Academy of Sciences of the United States of America. 107, 3

    Research output: Contribution to journal › Letter › Research › peer-review

  9. Comprehensive genome methylation analysis in bladder cancer: Identification and validation of novel methylated genes and application of these as urinary tumor markers

    Reinert, T., Modin, C., Castano, F. M., Lamy, P., Wojdacz, T. K., Hansen, L. L., Wiuf, Carsten, Borre, M., Dyrskjøt, L. & Ørntoft, T. F., 1 Sep 2011, In: Clinical Cancer Research. 17, 17, p. 5582-5592 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Association between genetic variation in a region on chromosome 11 and schizophrenia in large samples from Europe

    Rietschel, M., Mattheisen, M., Degenhardt, F., Kahn, R. S., Linszen, D. H., Os, J. V., Wiersma, D., Bruggeman, R., Cahn, W., de Haan, L., Krabbendam, L., Myin-Germeys, I., Mühleisen, T. W., Kirsch, P., Esslinger, C., Herms, S., Demontis, D., Steffens, M., Strohmaier, J., Haenisch, B. & 82 others, Breuer, R., Czerski, P. M., Giegling, I., Strengman, E., Schmael, C., Mors, O., Mortensen, P. B., Hougaard, D. M., Orntoft, T., Kapelski, P., Priebe, L., Basmanav, F. B., Forstner, A. J., Hoffmann, P. F. F., Meier, S., Nikitopoulos, J., Moebus, S., Alexander, M., Mössner, R., Wichmann, H., Schreiber, S., Rivandeneira, F., Hofman, A., Uitterlinden, A. G., Wienker, T. F., Schumacher, J., Hauser, J., Maier, W., Cantor, R., Erk, S., Schulze, T. G., Stefansson, H., Steinberg, S., Gustafsson, O., Sigurdsson, E., Petursson, H., Kong, A., Stefansson, K., Pietiläinen, O. P. H., Tuulio-Henriksson, A., Paunio, T., Lonnqvist, J., Suvisaari, J., Peltonen, L., Ruggeri, M., Tosato, S., Walshe, M., Murray, R., Collier, D. A., Clair, D. S., Hansen, T., Ingason, A., Jakobsen, K. D., Duong, L., Werge, T., Melle, I., Andreassen, O. A., Djurovic, S., Bitter, I., Réthelyi, J. M., Abramova, L., Kaleda, V., Golimbet, V., Jönsson, E. G., Terenius, L., Agartz, I., Winkel, R. V., Kenis, G., Hert, M. D., Veldink, J., Wiuf, Carsten, Didriksen, M., Craddock, N., Owen, M. J., O'Donovan, M. C., Børglum, A., Rujescu, D., Walter, H., Meyer-Lindenberg, A., Nöthen, M. M., Ophoff, R. A. & Cichon, S., 2012, In: Molecular Psychiatry. 17, 9, p. 906-917 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Graphical criteria for positive solutions to linear systems

    Saez, M., Feliu, Elisenda & Wiuf, Carsten, 1 Sep 2018, In: Linear Algebra and Its Applications. 552, p. 166-193

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Graphical reduction of reaction networks by linear elimination of species

    Saez Cornellana, M., Wiuf, Carsten & Feliu, Elisenda, 2017, In: Journal of Mathematical Biology. 74, 1, p. 195–237

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. The Coalescent of Bacterial Populations

    Schierup, M. H. & Wiuf, Carsten, 9 Apr 2010, Bacterial Population Genetics in Infectious Disease. Wiley, p. 1-18 18 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  14. Published

    A Reaction Network Scheme Which Implements Inference and Learning for Hidden Markov Models

    Singh, A., Wiuf, Carsten, Behera, A. & Gopalkrishnan, M., 2019, DNA Computing and Molecular Programming - 25th International Conference, DNA 25, Proceedings. Liu, Y. & Thachuk, C. (eds.). Springer, p. 54-79 26 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 11648 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  15. Published

    General theory for stochastic admixture graphs and F-statistics

    Soraggi, S. & Wiuf, Carsten, 2019, In: Theoretical Population Biology. 125, p. 56-66 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Powerful Inference With the D-Statistic on Low-Coverage Whole-Genome Data

    Soraggi, S., Wiuf, Carsten & Albrechtsen, Anders, 2018, In: G3: Genes, Genomes, Genetics (Bethesda). 8, 2, p. 551-566

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Recombination analysis using directed graphical models [4]

    Strimmer, K., Wiuf, Carsten & Moulton, V., 1 Jan 2001, In: MOLECULAR BIOLOGY AND EVOLUTION . 18, 1, p. 97-99 3 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  18. Evolution at the system level: the natural history of protein interaction networks

    Stumpf, M. P. H., Kelly, W. P., Thorne, T. & Wiuf, Carsten, 1 Jul 2007, In: Trends in Ecology and Evolution. 22, 7, p. 366-373 8 p.

    Research output: Contribution to journal › Review › Research › peer-review

  19. Statistical and evolutionary analysis of biological networks

    Stumpf, M. P. H. & Wiuf, Carsten, 1 Jan 2009, Imperial College Press. 170 p.

    Research output: Book/Report › Book › Research › peer-review

  20. Statistical model selection methods applied to biological networks

    Stumpf, M. P. H., Ingram, P. J., Nouvel, I. & Wiuf, Carsten, 1 Dec 2005, Transactions on Computational systems Biology III. p. 65-77 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 3737 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  21. Published

    Estimating the size of the human interactome

    Stumpf, M. P. H., Thorne, T., De Silva, E., Stewart, R., Hyeong, J. A., Lappe, M. & Wiuf, Carsten, 13 May 2008, In: Proceedings of the National Academy of Sciences of the United States of America. 105, 19, p. 6959-6964 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Subnets of scale-free networks are not scale-free: Sampling properties of networks

    Stumpf, M. P. H., Wiuf, Carsten & May, R. M., 22 Mar 2005, In: Proceedings of the National Academy of Sciences of the United States of America. 102, 12, p. 4221-4224 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Incomplete and noisy network data as a percolation process

    Stumpf, M. P. H. & Wiuf, Carsten, 6 Oct 2010, In: Journal of the Royal Society Interface. 7, 51, p. 1411-1419 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  24. Sampling properties of random graphs: The degree distribution

    Stumpf, M. P. H. & Wiuf, Carsten, 1 Sep 2005, In: Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 72, 3, 036118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Nonnegative linear elimination for chemical reaction networks

    Sáez, M., Wiuf, Carsten & Feliu, Elisenda, 2019, In: SIAM Journal on Applied Mathematics. 79, 6, p. 2434-2455

    Research output: Contribution to journal › Journal article › Research › peer-review

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