Carsten Wiuf
Professor
Department of Mathematical Sciences
Universitetsparken 5
2100 København Ø
- 2024
- Published
Maximum likelihood estimation and natural pairwise estimating equations are identical for three sequences and a symmetric 2-state substitution model
Hobolth, A. & Wiuf, Carsten, 2024, In: Theoretical Population Biology. 156, p. 1-4Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The asymptotic tails of limit distributions of continuous-time Markov chains
Xu, C., Hansen, M. C. & Wiuf, Carsten, 2024, In: Advances in Applied Probability. 56, 2, p. 693–734Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
A reaction network scheme for hidden Markov model parameter learning
Wiuf, Carsten, Behera, A., Singh, A. & Gopalkrishnan, M., 2023, In: Journal of the Royal Society Interface. 20, 203, 20220877.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating admixture pedigrees of recent hybrids without a contiguous reference genome
Garcia Erill, Genís, Hanghøj, Kristian Ebbesen, Heller, Rasmus, Wiuf, Carsten & Albrechtsen, Anders, 2023, In: Molecular Ecology Resources. 23, 7, p. 1604-1619 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evaluation of population structure inferred by principal component analysis or the admixture model
Van Waaij, J., Li, Song, Garcia Erill, Genís, Albrechtsen, Anders & Wiuf, Carsten, 2023, In: Genetics. 225, 2, 14 p., iyad157.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Full classification of dynamics for one-dimensional continuous-Time Markov chains with polynomial transition rates
Xu, C., Hansen, M. C. & Wiuf, Carsten, 2023, In: Advances in Applied Probability. 55, 1, p. 321-355Research output: Contribution to journal › Journal article › Research › peer-review
- Published
On the sum of chemical reactions
Hoessly, Linard David, Wiuf, Carsten & Xia, P., 2023, In: European Journal of Applied Mathematics. 34, 2, p. 303-325 23 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Parchment Glutamine Index (PQI): A novel method to estimate glutamine deamidation levels in parchment collagen obtained from low-quality MALDI-TOF data
Anila Bhuvanendran Nair, Bharath, Palomo, I. R., Markussen, Bo, Wiuf, Carsten, Fiddyment, S. & Collins, Matthew James, 2023, In: Peer Community Journal. 3, 18 p., e10.Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
Critical Parameters for Singular Perturbation Reductions of Chemical Reaction Networks
Feliu, Elisenda, Walcher, S. & Wiuf, Carsten, Dec 2022, In: Journal of Nonlinear Science. 32, 6, 41 p., 83.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimation of site frequency spectra from low-coverage sequencing data using stochastic EM reduces overfitting, runtime, and memory usage
Rasmussen, Malthe Sebro, Garcia Erill, Genís, Korneliussen, Thorfinn Sand, Wiuf, Carsten & Albrechtsen, Anders, 2022, In: Genetics. 222, 4, 15 p., iyac148.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimation of the covariance structure from SNP allele frequencies
van Waaij, J., Li, Z. & Wiuf, Carsten, 2022, In: Statistical Applications in Genetics and Molecular Biology. 21, 1, 20 p., 20220005.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fast reactions with non-interacting species in stochastic reaction networks
Hoessly, Linard David & Wiuf, Carsten, 2022, In: Mathematical Biosciences and Engineering. 19, 3, p. 2720-2749Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Parchment Glutamine Index (PQI): A novel method to estimate glutamine deamidation levels in parchment collagen obtained from low-quality MALDI-TOF data
Anila Bhuvanendran Nair, Bharath, Palomo, I. R., Markussen, Bo, Wiuf, Carsten, Fiddyment, S. & Collins, Matthew James, 2022, bioRxiv, 18 p.Research output: Working paper › Research › peer-review
- Published
Quasi-steady state and singular perturbation reduction for reaction networks with non-interacting species
Feliu, Elisenda, Lax, C., Walcher, S. & Wiuf, Carsten, 2022, In: SIAM Journal on Applied Dynamical Systems. 21, 2, p. 782–816Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Structural classification of continuous time Markov chains with applications
Xu, C., Hansen, M. C. & Wiuf, Carsten, 2022, In: Stochastics. 94, 7, p. 1003-1030Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
Coalescent models derived from birth–death processes
Crespo, F. F., Posada, D. & Wiuf, Carsten, 2021, In: Theoretical Population Biology. 142, p. 1-11Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The dynamics of stochastic mono-molecular reaction systems in stochastic environments
Cappelletti, D., Pal Majumder, A. & Wiuf, Carsten, 2021, In: Stochastic Processes and Their Applications. 137, p. 106-148Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
- Published
Existence of a unique quasi-stationary distribution in stochastic reaction networks
Christian Hansen, M. & Wiuf, Carsten, 1 Jan 2020, In: Electronic Journal of Probability. 25, 30 p., 45.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A proof of unlimited multistability for phosphorylation cycles
Feliu, Elisenda, Rendall, A. D. & Wiuf, Carsten, 2020, In: Nonlinearity. 33, p. 5629–5658Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Addition of flow reactions preserving multistationarity and bistability
Cappelletti, D., Feliu, Elisenda & Wiuf, Carsten, 2020, In: Mathematical Biosciences. 320, 8 p., 108295.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of hidden population structure in time-scaled phylogenies
Volz, E. M., Wiuf, Carsten, Grad, Y. H., Frost, S. D. W., Dennis, A. M. & Didelot, X., 2020, In: Systematic Biology. 69, 5, p. 884-896Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Stationary distributions of systems with discreteness-induced transitions
Bibbona, E., Kim, J. & Wiuf, Carsten, 2020, In: Journal of the Royal Society Interface. 17, 168, 11 p., 20200243.Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
A Reaction Network Scheme Which Implements Inference and Learning for Hidden Markov Models
Singh, A., Wiuf, Carsten, Behera, A. & Gopalkrishnan, M., 2019, DNA Computing and Molecular Programming - 25th International Conference, DNA 25, Proceedings. Liu, Y. & Thachuk, C. (eds.). Springer, p. 54-79 26 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 11648 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
General theory for stochastic admixture graphs and F-statistics
Soraggi, S. & Wiuf, Carsten, 2019, In: Theoretical Population Biology. 125, p. 56-66 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Linear elimination in chemical reaction networks
Sáez, M., Feliu, Elisenda & Wiuf, Carsten, 2019, Recent Advances in Differential Equations and Applications. Guirao, J. L. G., Hernández, J. A. M. & Esparza, F. P. (eds.). Springer, p. 177-193 17 p. (SEMA SIMAI Springer Series, Vol. 18).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Nonnegative linear elimination for chemical reaction networks
Sáez, M., Wiuf, Carsten & Feliu, Elisenda, 2019, In: SIAM Journal on Applied Mathematics. 79, 6, p. 2434-2455Research output: Contribution to journal › Journal article › Research › peer-review
- 2018
- Published
Graphical criteria for positive solutions to linear systems
Saez, M., Feliu, Elisenda & Wiuf, Carsten, 1 Sep 2018, In: Linear Algebra and Its Applications. 552, p. 166-193Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Node balanced steady states: Unifying and generalizing complex and detailed balanced steady states
Feliu, Elisenda, Cappelletti, D. & Wiuf, Carsten, Jul 2018, In: Mathematical Biosciences. 301, p. 68-82Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Some properties of the conditioned reconstructed process with Bernoulli sampling
Wiuf, Carsten, Jul 2018, In: Theoretical Population Biology. 122, p. 36-45 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
On the Liouville integrability of Edelstein's reaction system in R3
Ferragut, A., Valls, C. & Wiuf, Carsten, 1 Mar 2018, In: Chaos, Solitons and Fractals. 108, p. 129-135 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Powerful Inference With the D-Statistic on Low-Coverage Whole-Genome Data
Soraggi, S., Wiuf, Carsten & Albrechtsen, Anders, 2018, In: G3: Genes, Genomes, Genetics (Bethesda). 8, 2, p. 551-566Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
- Published
Identifying parameter regions for multistationarity
Conradi, C., Feliu, Elisenda, Mincheva, M. & Wiuf, Carsten, 13 Aug 2017, In: P L o S Computational Biology (Online). 13, 10, 25 p., e1005751.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
epiG: statistical inference and profiling of DNA methylation from whole-genome bisulfite sequencing data
Vincent, M., Mundbjerg, K., Pedersen, J. S., Liang, G., Jones, P. A., Orntoft, T. F., Sorensen, K. D. & Wiuf, Carsten, 21 Feb 2017, In: Genome Biology (Online Edition). 18, 38.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conservation Laws in Biochemical Reaction Networks
Mahdi, A., Ferragut, A., Valls, C. & Wiuf, Carsten, 2017, In: S I A M Journal on Applied Dynamical Systems. 16, 4, p. 2213-2232Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Graphical reduction of reaction networks by linear elimination of species
Saez Cornellana, M., Wiuf, Carsten & Feliu, Elisenda, 2017, In: Journal of Mathematical Biology. 74, 1, p. 195–237Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Intermediates and Generic Convergence to Equilibria
Marcondes de Freitas, M., Wiuf, Carsten & Feliu, Elisenda, 2017, In: Bulletin of Mathematical Biology. 79, 7, p. 1662–1686Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Intermediates, Catalysts, Persistence, and Boundary Steady States
Marcondes de Freitas, M., Feliu, Elisenda & Wiuf, Carsten, 2017, In: Journal of Mathematical Biology. 74, 4, p. 887–932Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Uniform Approximation of Solutions by Elimination of Intermediate Species in Deterministic Reaction Networks
Cappelletti, D. & Wiuf, Carsten, 2017, In: S I A M Journal on Applied Dynamical Systems. 16, 4, p. 2259-2286Research output: Contribution to journal › Journal article › Research › peer-review
- 2016
- Published
Elimination of intermediate species in multiscale stochastic reaction networks
Cappelletti, D. & Wiuf, Carsten, 1 Oct 2016, In: Annals of Applied Probability. 26, 5, p. 2915-2958 44 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Core signalling motif displaying multistability through multi-state enzymes
Feng, S., Saez Cornellana, M., Wiuf, Carsten, Feliu, Elisenda & Soyer, O. S., Oct 2016, In: Journal of the Royal Society. Interface. 13, 123, 20160524.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
LandScape: a simple method to aggregate p-values and other stochastic variables without a priori grouping
Wiuf, Carsten, Pallesen, J. S., Foldager, L. & Grove, J., Aug 2016, In: Statistical Applications in Genetics and Molecular Biology. 15, 4, p. 349-361Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Challenges in microbial ecology: building predictive understanding of community function and dynamics
Widder, S., Allen, R. J., Pfeiffer, T., Curtis, T. P., Wiuf, C. H., Sloan, W. T., Cordero, O. X., Brown, S. P., Momeni, B., Shou, W., Kettle, H., Flint, H. J., Haas, A. F., Laroche, B., Kreft, J-U., Rainey, P. B., Freilich, S., Schuster, S., Milferstedt, K., van der Meer, J. R. & 10 others, , 2016, In: I S M E Journal. 10, 11, p. 2557-2568 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Product-Form Poisson-Like Distributions and Complex Balanced Reaction Systems
Cappelletti, D. & Wiuf, Carsten, 2016, In: S I A M Journal on Applied Mathematics. 76, 1, p. 411-432Research output: Contribution to journal › Journal article › Research › peer-review
- 2015
- Published
Phosphorelay of non-orthodox two component systems functions through a bi-molecular mechanism in vivo: the case of ArcB
Jovanovic, G., Sheng, X., Ale, A., Feliu, Elisenda, Harrington, H. A., Kirk, P., Wiuf, Carsten, Buck, M. & Stumpf, M. P. H., 23 Mar 2015, In: Molecular BioSystems. 11, p. 1348-1359Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Finding the positive feedback loops underlying multi-stationarity
Feliu, Elisenda & Wiuf, Carsten, 2015, In: B M C Systems Biology. 9, 22.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Lyapunov Functions, Stationary Distributions, and Non-equilibrium Potential for Reaction Networks
Anderson, D. F., Craciun, G., Gopalkrishnan , M. & Wiuf, Carsten, 2015, In: Bulletin of Mathematical Biology. 77, 9, p. 1744-1767Research output: Contribution to journal › Journal article › Research › peer-review
- 2014
- Published
Genome-wide study of association and interaction with maternal cytomegalovirus infection suggests new schizophrenia loci
Børglum, A. D., Demontis, D., Grove, J., Pallesen, J., Hollegaard, M. V., Pedersen, C. B., Hedemand, A., Mattheisen, M., Uitterlinden, A., Nyegaard, M., Ørntoft, T., Wiuf, C. H., Didriksen, M., Nordentoft, M., Nöthen, M. M., Rietschel, M., Ophoff, R. A., Cichon, S., Yolken, R. H., Hougaard, D. M. & 3 others, , Mar 2014, In: Molecular Psychiatry. 19, 3, p. 325-333 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Large scale identification and categorization of protein sequences using structured logistic regression
Pedersen, B. P., Ifrim, G., Liboriussen, P., Axelsen, K. B., Palmgren, Michael, Nissen, P., Wiuf, Carsten & Pedersen, C. N. S., 20 Jan 2014, In: PLOS ONE. 9, 1, 11 p., e85139.Research output: Contribution to journal › Journal article › Research › peer-review
- 2013
- Published
Power-Law Kinetics and Determinant Criteria for the Preclusion of Multistationarity in Networks of Interacting Species
Wiuf, Carsten & Feliu, Elisenda, 16 Oct 2013, In: S I A M Journal on Applied Dynamical Systems. 12, 4, p. 1685-1721 37 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cellular compartments cause multistability and allow cells to process more information
Harrington, H. A., Feliu, Elisenda, Wiuf, Carsten & Stumpf, M. P. H., 16 Apr 2013, In: Biophysical Journal. 104, 8, p. 1824-1831 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 36080139
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Large scale identification and categorization of protein sequences using structured logistic regression
Research output: Contribution to journal › Journal article › Research › peer-review
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Graphical reduction of reaction networks by linear elimination of species
Research output: Contribution to journal › Journal article › Research › peer-review
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Identifying parameter regions for multistationarity
Research output: Contribution to journal › Journal article › Research › peer-review
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