Carsten Wiuf
Professor
Department of Mathematical Sciences
Universitetsparken 5
2100 København Ø
- 2008
Germline mutation in RNASEL predicts increased risk of head and neck, uterine cervix and breast cancer
Madsen, B. E., Ramos, E. M., Boulard, M., Duda, K., Overgaard, J., Nordsmark, M., Wiuf, Carsten & Hansen, L. L., 25 Jun 2008, In: PLOS ONE. 3, 6, e2492.Research output: Contribution to journal › Journal article › Research › peer-review
Short tandem repeats in human exons: A target for disease mutations
Madsen, B. E., Villesen, P. & Wiuf, Carsten, 12 Sep 2008, In: BMC Genomics. 9, 410.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating the size of the human interactome
Stumpf, M. P. H., Thorne, T., De Silva, E., Stewart, R., Hyeong, J. A., Lappe, M. & Wiuf, Carsten, 13 May 2008, In: Proceedings of the National Academy of Sciences of the United States of America. 105, 19, p. 6959-6964 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2007
Frequent occurrence of uniparental disomy in colorectal cancer
Andersen, C. L., Wiuf, Carsten, Kruhøffer, M., Korsgaard, M., Laurberg, S. & Ørntoft, T. F., 1 Jan 2007, In: Carcinogenesis. 28, 1, p. 38-48 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Ab initio identification of human microRNAs based on structure motifs
Brameier, M. & Wiuf, Carsten, 18 Dec 2007, In: BMC Bioinformatics. 8, 478.Research output: Contribution to journal › Journal article › Research › peer-review
Co-clustering and visualization of gene expression data and gene ontology terms for Saccharomyces cerevisiae using self-organizing maps
Brameier, M. & Wiuf, Carsten, 1 Apr 2007, In: Journal of Biomedical Informatics. 40, 2, p. 160-173 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
Two variance results in population genetics theory
Ewens, W. J., Choudhury, A. R., Lewontin, R. C. & Wiuf, Carsten, 1 Apr 2007, In: Mathematical Population Studies. 14, 2, p. 93-110 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
Conflicting results in SNP genotype assessment
Hansen, L. L., Madsen, B. E., Pedersen, K. & Wiuf, Carsten, 1 Dec 2007, In: BioTechniques. 43, 6, p. 756-762 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays
Lamy, P., Andersen, C. L., Dyrskjot, L., Torring, N. & Wiuf, Carsten, 9 Nov 2007, In: BMC Bioinformatics. 8, 434.Research output: Contribution to journal › Journal article › Research › peer-review
A periodic pattern of SNPs in the human genome
Madsen, B. E., Villesen, P. & Wiuf, Carsten, 1 Oct 2007, In: Genome Research. 17, 10, p. 1414-1419 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum
Ratmann, O., Jørgensen, O., Hinkley, T., Stumpf, M., Richardson, S. & Wiuf, Carsten, 1 Nov 2007, In: PLOS Computational Biology. 3, 11, p. 2266-2278 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
Evolution at the system level: the natural history of protein interaction networks
Stumpf, M. P. H., Kelly, W. P., Thorne, T. & Wiuf, Carsten, 1 Jul 2007, In: Trends in Ecology and Evolution. 22, 7, p. 366-373 8 p.Research output: Contribution to journal › Review › Research › peer-review
SNPTools: A software tool for visualization and analysis of microarray data
Sørensen, F. J., Andersen, C. L. & Wiuf, Carsten, 15 Jun 2007, In: Bioinformatics. 23, 12, p. 1550-1552 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
Genome-wide analysis of allelic imbalance in prostate cancer using the Affymetrix 50K SNP mapping array
Tørring, N., Borre, M., Sørensen, K. D., Andersen, C. L., Wiuf, Carsten & Ørntoft, T. F., 12 Feb 2007, In: British Journal of Cancer. 96, 3, p. 499-506 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2006
SOX4 expression in bladder carcinoma: Clinical aspects and in vitro functional characterization
Aaboe, M., Birkenkamp-Demtroder, K., Wiuf, Carsten, Sørensen, F. B., Thykjaer, T., Sauter, G., Jensen, K. M. E., Dyrskjøt, L. & Ørntoft, T., 1 Apr 2006, In: Cancer Research. 66, 7, p. 3434-3442 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Convergence properties of the degree distribution of some growing network models
Hagberg, O. & Wiuf, Carsten, 1 Aug 2006, In: Bulletin of Mathematical Biology. 68, 6, p. 1275-1291 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
Are microRNAs located in genomic regions associated with cancer?
Lamy, P., Andersen, C. L., Dyrskjøt, L., Tørring, N., Ørntoft, T. & Wiuf, Carsten, 20 Nov 2006, In: British Journal of Cancer. 95, 10, p. 1415-1418 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
Genotyping and annotation of Affymetrix SNP arrays
Lamy, P., Andersen, C. L., Wikman, F. P. & Wiuf, Carsten, 21 Sep 2006, In: Nucleic Acids Research. 34, 14, e100.Research output: Contribution to journal › Journal article › Research › peer-review
A likelihood approach to analysis of network data
Wiuf, Carsten, Brameier, M., Hagberg, O. & Stumpf, M. P. H., 16 May 2006, In: Proceedings of the National Academy of Sciences of the United States of America. 103, 20, p. 7566-7570 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
Binomial subsampling
Wiuf, Carsten & Stumpf, M. P. H., 1 Jan 2006, In: Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences. 462, 2068, p. 1181-1195 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
Consistency of estimators of population scaled parameters using composite likelihood
Wiuf, Carsten, 1 Nov 2006, In: Journal of Mathematical Biology. 53, 5, p. 821-841 21 p.Research output: Contribution to journal › Journal article › Research › peer-review
The effects of incomplete protein interaction data on structural and evolutionary inferences
de Silva, E., Thorne, T., Ingram, P., Agrafioti, I., Swire, J., Wiuf, Carsten & Stumpf, M. P. H., 3 Nov 2006, In: BMC Biology. 4, 39.Research output: Contribution to journal › Journal article › Research › peer-review
- 2005
High-density single nucleotide polymorphism array defines novel stage and location-dependent allelic imbalances in human bladder tumors
Koed, K., Wiuf, Carsten, Christensen, L. L., Wikman, F. P., Zieger, K., Møller, K., Von Der Maase, H. & Ørntoft, T. F., 1 Jan 2005, In: Cancer Research. 65, 1, p. 34-45 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
Statistical model selection methods applied to biological networks
Stumpf, M. P. H., Ingram, P. J., Nouvel, I. & Wiuf, Carsten, 1 Dec 2005, Transactions on Computational systems Biology III. p. 65-77 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 3737 LNBI).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
Sampling properties of random graphs: The degree distribution
Stumpf, M. P. H. & Wiuf, Carsten, 1 Sep 2005, In: Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 72, 3, 036118.Research output: Contribution to journal › Journal article › Research › peer-review
Subnets of scale-free networks are not scale-free: Sampling properties of networks
Stumpf, M. P. H., Wiuf, Carsten & May, R. M., 22 Mar 2005, In: Proceedings of the National Academy of Sciences of the United States of America. 102, 12, p. 4221-4224 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
Role of activating fibroblast growth factor receptor 3 mutations in the development of bladder tumors
Zieger, K., Dyrskjøt, L., Wiuf, Carsten, Jensen, J. L., Andersen, C. L., Jensen, K. M. E. & Ørntoft, T. F., 1 Nov 2005, In: Clinical Cancer Research. 11, 21, p. 7709-7719 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2004
Identification of endogenous retroviral reading frames in the human genome
Villesen, P., Aagaard, L., Wiuf, Carsten & Pedersen, F. S., 11 Oct 2004, In: Retrovirology. 1, 32.Research output: Contribution to journal › Journal article › Research › peer-review
Inference on Recombination and Block Structure Using Unphased Data
Wiuf, Carsten, 1 Jan 2004, In: Genetics. 166, 1, p. 537-545 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
The probability and chromosomal extent of trans-specific polymorphism
Wiuf, Carsten, Zhao, K., Innan, H. & Nordborg, M., 1 Dec 2004, In: Genetics. 168, 4, p. 2363-2372 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2003
Simulating haplotype blocks in the human genome
Posada, D. & Wiuf, Carsten, 1 Feb 2003, In: Bioinformatics. 19, 2, p. 289-290 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
A coalescent model of recombination hotspots
Wiuf, Carsten & Posada, D., 1 May 2003, In: Genetics. 164, 1, p. 407-417 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Inferring population history from genealogical trees
Wiuf, Carsten, 1 Mar 2003, In: Journal of Mathematical Biology. 46, 3, p. 241-264 24 p.Research output: Contribution to journal › Journal article › Research › peer-review
Some notes on the combinatorial properties of haplotype tagging
Wiuf, Carsten, Laidlaw, Z. & Stumpf, M. P. H., 1 Jan 2003, In: Mathematical Biosciences. 185, 2, p. 205-216 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2002
On the minimum number of topologies explaining a sample of DNA sequences
Wiuf, Carsten, 1 Dec 2002, In: Theoretical Population Biology. 62, 4, p. 357-363 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2001
Recombination analysis using directed graphical models [4]
Strimmer, K., Wiuf, Carsten & Moulton, V., 1 Jan 2001, In: MOLECULAR BIOLOGY AND EVOLUTION . 18, 1, p. 97-99 3 p.Research output: Contribution to journal › Letter › Research › peer-review
Do ΔF508 heterozygotes have a selective advantage?
Wiuf, Carsten, 29 Aug 2001, In: Genetical Research. 78, 1, p. 41-47 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
A simulation study of the reliability of recombination detection methods
Wiuf, Carsten, Christensen, T. & Hein, J., 1 Jan 2001, In: MOLECULAR BIOLOGY AND EVOLUTION . 18, 10, p. 1929-1939 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Rare alleles and selection
Wiuf, Carsten, 1 Jan 2001, In: Theoretical Population Biology. 59, 4, p. 287-296 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
Recombination in human mitochondrial DNA?
Wiuf, Carsten, 17 Nov 2001, In: Genetics. 159, 2, p. 749-756 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2000
Statistical alignment: Computational properties, homology testing and goodness-of-fit
Hein, J., Wiuf, Carsten, Knudsen, B., Møller, M. B. & Wibling, G., 8 Sep 2000, In: Journal of Molecular Biology. 302, 1, p. 265-279 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
A coalescence approach to gene conversion
Wiuf, Carsten, 1 Jan 2000, In: Theoretical Population Biology. 57, 4, p. 357-367 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
On the genealogy of a sample of neutral rare alleles
Wiuf, Carsten, 1 Jan 2000, In: Theoretical Population Biology. 58, 1, p. 61-75 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
The coalescent with gene conversion
Wiuf, Carsten & Hein, J., 1 May 2000, In: Genetics. 155, 1, p. 451-462 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 1999
Conditional genealogies and the age of a neutral mutant
Wiuf, Carsten & Donnelly, P., 1 Jan 1999, In: Theoretical Population Biology. 56, 2, p. 183-201 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
Recombination as a point process along sequences
Wiuf, Carsten & Hein, J., 1 Jan 1999, In: Theoretical Population Biology. 55, 3, p. 248-259 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
The ancestry of a sample of sequences subject to recombination
Wiuf, Carsten & Hein, J., 1 Mar 1999, In: Genetics. 151, 3, p. 1217-1228 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 1998
A codon-based model designed to describe lentiviral evolution
Pedersen, A. M. K., Wiuf, Carsten & Christiansen, F. B., 1 Jan 1998, In: MOLECULAR BIOLOGY AND EVOLUTION . 15, 8, p. 1069-1081 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 1997
On the number of ancestors to a DNA sequence
Wiuf, Carsten & Hein, J., 1 Nov 1997, In: Genetics. 147, 3, p. 1459-1468 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 36080139
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Large scale identification and categorization of protein sequences using structured logistic regression
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Graphical reduction of reaction networks by linear elimination of species
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Identifying parameter regions for multistationarity
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