Carsten Wiuf

Carsten Wiuf

Professor

ORCID: 0000-0002-1302-4445

Publication year:
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  1. 2024
  2. Published

    Maximum likelihood estimation and natural pairwise estimating equations are identical for three sequences and a symmetric 2-state substitution model

    Hobolth, A. & Wiuf, Carsten, 2024, In: Theoretical Population Biology. 156, p. 1-4

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. 2023
  4. Published

    A reaction network scheme for hidden Markov model parameter learning

    Wiuf, Carsten, Behera, A., Singh, A. & Gopalkrishnan, M., 2023, In: Journal of the Royal Society Interface. 20, 203, 20220877.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Estimating admixture pedigrees of recent hybrids without a contiguous reference genome

    Garcia Erill, Genís, Hanghøj, Kristian Ebbesen, Heller, Rasmus, Wiuf, Carsten & Albrechtsen, Anders, 2023, In: Molecular Ecology Resources. 23, 7, p. 1604-1619 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Evaluation of population structure inferred by principal component analysis or the admixture model

    Van Waaij, J., Li, Song, Garcia Erill, Genís, Albrechtsen, Anders & Wiuf, Carsten, 2023, In: Genetics. 225, 2, 14 p., iyad157.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Full classification of dynamics for one-dimensional continuous-Time Markov chains with polynomial transition rates

    Xu, C., Hansen, M. C. & Wiuf, Carsten, 2023, In: Advances in Applied Probability. 55, 1, p. 321-355

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    On the sum of chemical reactions

    Hoessly, Linard David, Wiuf, Carsten & Xia, P., 2023, In: European Journal of Applied Mathematics. 34, 2, p. 303-325 23 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Parchment Glutamine Index (PQI): A novel method to estimate glutamine deamidation levels in parchment collagen obtained from low-quality MALDI-TOF data

    Anila Bhuvanendran Nair, Bharath, Palomo, I. R., Markussen, Bo, Wiuf, Carsten, Fiddyment, S. & Collins, Matthew James, 2023, In: Peer Community Journal. 3, 18 p., e10.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. 2022
  11. Published

    Critical Parameters for Singular Perturbation Reductions of Chemical Reaction Networks

    Feliu, Elisenda, Walcher, S. & Wiuf, Carsten, Dec 2022, In: Journal of Nonlinear Science. 32, 6, 41 p., 83.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Estimation of site frequency spectra from low-coverage sequencing data using stochastic EM reduces overfitting, runtime, and memory usage

    Rasmussen, Malthe Sebro, Garcia Erill, Genís, Korneliussen, Thorfinn Sand, Wiuf, Carsten & Albrechtsen, Anders, 2022, In: Genetics. 222, 4, 15 p., iyac148.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Estimation of the covariance structure from SNP allele frequencies

    van Waaij, J., Li, Z. & Wiuf, Carsten, 2022, In: Statistical Applications in Genetics and Molecular Biology. 21, 1, 20 p., 20220005.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Fast reactions with non-interacting species in stochastic reaction networks

    Hoessly, Linard David & Wiuf, Carsten, 2022, In: Mathematical Biosciences and Engineering. 19, 3, p. 2720-2749

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Parchment Glutamine Index (PQI): A novel method to estimate glutamine deamidation levels in parchment collagen obtained from low-quality MALDI-TOF data

    Anila Bhuvanendran Nair, Bharath, Palomo, I. R., Markussen, Bo, Wiuf, Carsten, Fiddyment, S. & Collins, Matthew James, 2022, bioRxiv, 18 p.

    Research output: Working paper › Research › peer-review

  16. Published

    Quasi-steady state and singular perturbation reduction for reaction networks with non-interacting species

    Feliu, Elisenda, Lax, C., Walcher, S. & Wiuf, Carsten, 2022, In: SIAM Journal on Applied Dynamical Systems. 21, 2, p. 782–816

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Structural classification of continuous time Markov chains with applications

    Xu, C., Hansen, M. C. & Wiuf, Carsten, 2022, In: Stochastics. 94, 7, p. 1003-1030

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. 2021
  19. Published

    Coalescent models derived from birth–death processes

    Crespo, F. F., Posada, D. & Wiuf, Carsten, 2021, In: Theoretical Population Biology. 142, p. 1-11

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    The dynamics of stochastic mono-molecular reaction systems in stochastic environments

    Cappelletti, D., Pal Majumder, A. & Wiuf, Carsten, 2021, In: Stochastic Processes and Their Applications. 137, p. 106-148

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. 2020
  22. Published

    Existence of a unique quasi-stationary distribution in stochastic reaction networks

    Christian Hansen, M. & Wiuf, Carsten, 1 Jan 2020, In: Electronic Journal of Probability. 25, 30 p., 45.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    A proof of unlimited multistability for phosphorylation cycles

    Feliu, Elisenda, Rendall, A. D. & Wiuf, Carsten, 2020, In: Nonlinearity. 33, p. 5629–5658

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Addition of flow reactions preserving multistationarity and bistability

    Cappelletti, D., Feliu, Elisenda & Wiuf, Carsten, 2020, In: Mathematical Biosciences. 320, 8 p., 108295.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Identification of hidden population structure in time-scaled phylogenies

    Volz, E. M., Wiuf, Carsten, Grad, Y. H., Frost, S. D. W., Dennis, A. M. & Didelot, X., 2020, In: Systematic Biology. 69, 5, p. 884-896

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Stationary distributions of systems with discreteness-induced transitions

    Bibbona, E., Kim, J. & Wiuf, Carsten, 2020, In: Journal of the Royal Society Interface. 17, 168, 11 p., 20200243.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. 2019
  28. Published

    A Reaction Network Scheme Which Implements Inference and Learning for Hidden Markov Models

    Singh, A., Wiuf, Carsten, Behera, A. & Gopalkrishnan, M., 2019, DNA Computing and Molecular Programming - 25th International Conference, DNA 25, Proceedings. Liu, Y. & Thachuk, C. (eds.). Springer, p. 54-79 26 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 11648 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  29. Published

    General theory for stochastic admixture graphs and F-statistics

    Soraggi, S. & Wiuf, Carsten, 2019, In: Theoretical Population Biology. 125, p. 56-66 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Linear elimination in chemical reaction networks

    Sáez, M., Feliu, Elisenda & Wiuf, Carsten, 2019, Recent Advances in Differential Equations and Applications. Guirao, J. L. G., Hernández, J. A. M. & Esparza, F. P. (eds.). Springer, p. 177-193 17 p. (SEMA SIMAI Springer Series, Vol. 18).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  31. Published

    Nonnegative linear elimination for chemical reaction networks

    Sáez, M., Wiuf, Carsten & Feliu, Elisenda, 2019, In: SIAM Journal on Applied Mathematics. 79, 6, p. 2434-2455

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. 2018
  33. Published

    Graphical criteria for positive solutions to linear systems

    Saez, M., Feliu, Elisenda & Wiuf, Carsten, 1 Sep 2018, In: Linear Algebra and Its Applications. 552, p. 166-193

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Node balanced steady states: Unifying and generalizing complex and detailed balanced steady states

    Feliu, Elisenda, Cappelletti, D. & Wiuf, Carsten, Jul 2018, In: Mathematical Biosciences. 301, p. 68-82

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Some properties of the conditioned reconstructed process with Bernoulli sampling

    Wiuf, Carsten, Jul 2018, In: Theoretical Population Biology. 122, p. 36-45 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    On the Liouville integrability of Edelstein's reaction system in R3

    Ferragut, A., Valls, C. & Wiuf, Carsten, 1 Mar 2018, In: Chaos, Solitons and Fractals. 108, p. 129-135 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Powerful Inference With the D-Statistic on Low-Coverage Whole-Genome Data

    Soraggi, S., Wiuf, Carsten & Albrechtsen, Anders, 2018, In: G3: Genes, Genomes, Genetics (Bethesda). 8, 2, p. 551-566

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. 2017
  39. Published

    Identifying parameter regions for multistationarity

    Conradi, C., Feliu, Elisenda, Mincheva, M. & Wiuf, Carsten, 13 Aug 2017, In: P L o S Computational Biology (Online). 13, 10, 25 p., e1005751.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    epiG: statistical inference and profiling of DNA methylation from whole-genome bisulfite sequencing data

    Vincent, M., Mundbjerg, K., Pedersen, J. S., Liang, G., Jones, P. A., Orntoft, T. F., Sorensen, K. D. & Wiuf, Carsten, 21 Feb 2017, In: Genome Biology (Online Edition). 18, 38.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Conservation Laws in Biochemical Reaction Networks

    Mahdi, A., Ferragut, A., Valls, C. & Wiuf, Carsten, 2017, In: S I A M Journal on Applied Dynamical Systems. 16, 4, p. 2213-2232

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Graphical reduction of reaction networks by linear elimination of species

    Saez Cornellana, M., Wiuf, Carsten & Feliu, Elisenda, 2017, In: Journal of Mathematical Biology. 74, 1, p. 195–237

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Intermediates and Generic Convergence to Equilibria

    Marcondes de Freitas, M., Wiuf, Carsten & Feliu, Elisenda, 2017, In: Bulletin of Mathematical Biology. 79, 7, p. 1662–1686

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Intermediates, Catalysts, Persistence, and Boundary Steady States

    Marcondes de Freitas, M., Feliu, Elisenda & Wiuf, Carsten, 2017, In: Journal of Mathematical Biology. 74, 4, p. 887–932

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Uniform Approximation of Solutions by Elimination of Intermediate Species in Deterministic Reaction Networks

    Cappelletti, D. & Wiuf, Carsten, 2017, In: S I A M Journal on Applied Dynamical Systems. 16, 4, p. 2259-2286

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. 2016
  47. Published

    Elimination of intermediate species in multiscale stochastic reaction networks

    Cappelletti, D. & Wiuf, Carsten, 1 Oct 2016, In: Annals of Applied Probability. 26, 5, p. 2915-2958 44 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Core signalling motif displaying multistability through multi-state enzymes

    Feng, S., Saez Cornellana, M., Wiuf, Carsten, Feliu, Elisenda & Soyer, O. S., Oct 2016, In: Journal of the Royal Society. Interface. 13, 123, 20160524.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    LandScape: a simple method to aggregate p-values and other stochastic variables without a priori grouping

    Wiuf, Carsten, Pallesen, J. S., Foldager, L. & Grove, J., Aug 2016, In: Statistical Applications in Genetics and Molecular Biology. 15, 4, p. 349-361

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Challenges in microbial ecology: building predictive understanding of community function and dynamics

    Widder, S., Allen, R. J., Pfeiffer, T., Curtis, T. P., Wiuf, C. H., Sloan, W. T., Cordero, O. X., Brown, S. P., Momeni, B., Shou, W., Kettle, H., Flint, H. J., Haas, A. F., Laroche, B., Kreft, J-U., Rainey, P. B., Freilich, S., Schuster, S., Milferstedt, K., van der Meer, J. R. & 10 others, Groβkopf, T., Huisman, J., Free, A., Picioreanu, C., Quince, C., Klapper, I., Labarthe, S., Smets, B. F., Wang, H. & Soyer, O. S., 2016, In: I S M E Journal. 10, 11, p. 2557-2568 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Product-Form Poisson-Like Distributions and Complex Balanced Reaction Systems

    Cappelletti, D. & Wiuf, Carsten, 2016, In: S I A M Journal on Applied Mathematics. 76, 1, p. 411-432

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. 2015
  53. Published

    Phosphorelay of non-orthodox two component systems functions through a bi-molecular mechanism in vivo: the case of ArcB

    Jovanovic, G., Sheng, X., Ale, A., Feliu, Elisenda, Harrington, H. A., Kirk, P., Wiuf, Carsten, Buck, M. & Stumpf, M. P. H., 23 Mar 2015, In: Molecular BioSystems. 11, p. 1348-1359

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Finding the positive feedback loops underlying multi-stationarity

    Feliu, Elisenda & Wiuf, Carsten, 2015, In: B M C Systems Biology. 9, 22.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Lyapunov Functions, Stationary Distributions, and Non-equilibrium Potential for Reaction Networks

    Anderson, D. F., Craciun, G., Gopalkrishnan , M. & Wiuf, Carsten, 2015, In: Bulletin of Mathematical Biology. 77, 9, p. 1744-1767

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. 2014
  57. Published

    Genome-wide study of association and interaction with maternal cytomegalovirus infection suggests new schizophrenia loci

    Børglum, A. D., Demontis, D., Grove, J., Pallesen, J., Hollegaard, M. V., Pedersen, C. B., Hedemand, A., Mattheisen, M., Uitterlinden, A., Nyegaard, M., Ørntoft, T., Wiuf, C. H., Didriksen, M., Nordentoft, M., Nöthen, M. M., Rietschel, M., Ophoff, R. A., Cichon, S., Yolken, R. H., Hougaard, D. M. & 3 others, Mortensen, P. B., Mors, O. & GROUP investigators10, G. I., Mar 2014, In: Molecular Psychiatry. 19, 3, p. 325-333 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Large scale identification and categorization of protein sequences using structured logistic regression

    Pedersen, B. P., Ifrim, G., Liboriussen, P., Axelsen, K. B., Palmgren, Michael, Nissen, P., Wiuf, Carsten & Pedersen, C. N. S., 20 Jan 2014, In: PLOS ONE. 9, 1, 11 p., e85139.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. 2013
  60. Published

    Power-Law Kinetics and Determinant Criteria for the Preclusion of Multistationarity in Networks of Interacting Species

    Wiuf, Carsten & Feliu, Elisenda, 16 Oct 2013, In: S I A M Journal on Applied Dynamical Systems. 12, 4, p. 1685-1721 37 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Cellular compartments cause multistability and allow cells to process more information

    Harrington, H. A., Feliu, Elisenda, Wiuf, Carsten & Stumpf, M. P. H., 16 Apr 2013, In: Biophysical Journal. 104, 8, p. 1824-1831 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    A computational method to preclude multistationarity in networks of interacting species

    Feliu, Elisenda & Wiuf, Carsten, 2013, In: Bioinformatics. 29, 18, p. 2327-2334

    Research output: Contribution to journal › Journal article › Research › peer-review

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