Workshop on Dynamical Stochastic Modeling in Biology

Programme:



Wednesday, January 8


8:45 - 9:15
Registration and coffee/tea
9:15 - 9:45
Introduction by Marianne Huebner (Michigan State University)
9:45 - 10:30
Hidde de Jong (INRIA, France): Qualitative simulation of gene regulatory networks
10:45 - 11:30

Eugene van Someren (Technical University of Delft): Multicriterion optimization for genetic network modeling
11:45 - 12:30
Gesine Reinert (University of Oxford): Small world networks
12:30 - 14:00
Lunch
14:00 - 14:45
Dennis Bray (University of Cambridge): Physical networks in cellular signalling
14:45 - 15:15
Coffee/tea
15:15 - 16:00

Michael S. Samoilov (University of California, Berkeley): Stochastic Effects in Enzymatic Biomolecular Systems
16:15 - 17:00

Fengzhu Sun (University of Southern California): Prediction of protein function using protein-protein interaction data



Thursday, January 9


9:15 - 9:45
Coffee/tea
9:45 - 10:30
Mogens Høgh Jensen (University of Copenhagen): Time-delay modelling of gene expressions
10:45 - 11:30

Fengzhu Sun (University of Southern California): Understanding the mutation mechanism during the polymerase chain reaction.
11:45 - 12:30
David Steinsaltz (University of California, Berkeley): Stochastic models of aging and mortality
12:30 - 14:00
Lunch
14:00 - 14:45
Anders Krogh (University of Copenhagen): Hidden Markov models of proteins and DNA
14:45 - 15:15
Coffee/tea
15:15 - 16:00

Susanne Ditlevsen (University of Copenhagen): A model of the uptake of alternative fatty acids by isolated rat liver based on stochastic differential equations
16:15 - 17:00

Bo Martin Bibby (The Royal Veterinary and Agricultural University, Copenhagen): Modelling lipid oxidation



Friday, January 10


9:15 - 9:45
Coffee/tea
9:45 - 10:30

Bryan T. Grenfell (University of Cambridge): Waves and sparks in the dynamics of infectious diseases
10:45 - 11:30

Valerie Isham (University College London): The effect of spatial scale and spatial clumping in the infection process on the spread of macroparasites
11:45 - 12:30

Catherine Laredo (INRA/Paris 6-7): Mechanistic models and field experiments for studying pollen dispersal in homogeneous and inhomogeneous environments
12:30 - 14:00
Lunch
14:00 - 14:45
Marianne Huebner (Michigan State University): Daphnia, parasites and lake bottom dynamics
14:45 - 15:15
Coffee/tea
15:15 - 15:45

Michael Höhle (The Royal Veterinary and Agricultural University, Copenhagen): Extending parameterisation of stochastic SIR epidemic models, with application to pig-production
15:45 - 16:15

Ketill Ingolfsson (Temple University, Philadelphia) Singular perturbations in the Mendelean dynamical system